CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_GEOUR (Asparaginyl-tRNA synthetase OS=Geobacter uraniireducens (strain Rf4) GN=asnS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    7 DVGMVDPA--KYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            ++ ++ PA   YP+ K + + E+LR     RPRTNT  AV R+R++LA A H F  ++GFLY+HTPIIT +DCEGAGE+F+VTTL
Sbjct:   94 ELEIIGPADDSYPLQKKRHSFEYLRTIAHLRPRTNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITANDCEGAGELFRVTTL 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOPS (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain SM101 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 8.523e-20
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            GM D + YP+ K + T E+LR     RPR+N  +A  R+R+  AYA H F Q QGF+Y HTPI+T SDCEGAGEMF+VTTL   A  + +E
Sbjct:  102 GMSD-SDYPLQKKRHTFEYLRTIAHLRPRSNAFSATFRVRSVAAYAIHKFFQDQGFVYTHTPILTGSDCEGAGEMFRVTTLDMMAPPISEE 191          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_HAHCH (Asparaginyl-tRNA synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:   10 VGMVD-PAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG+VD P  YP+ K + T EFLR     RPRTN   AV R+R  L++A H F  +QGF +I+TPI+T SDCEGAGE+F+V+TL
Sbjct:  100 VGLVDDPETYPVAKKRHTFEFLRGVAHLRPRTNAFGAVTRVRTTLSHAVHHFFYEQGFQWINTPILTASDCEGAGELFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOPE (Asparaginyl-tRNA synthetase OS=Clostridium perfringens GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            GM D + YP+ K + T E+LR     RPR+N  +A  R+R+  AYA H F Q QGF+Y HTPI+T SDCEGAGEMF+VTTL   A  + +E
Sbjct:  102 GMSD-SDYPLQKKRHTFEYLRTIAHLRPRSNAFSATFRVRSVAAYAIHKFFQDQGFVYTHTPILTGSDCEGAGEMFRVTTLDMMAPPIAEE 191          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOP1 (Asparaginyl-tRNA synthetase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            GM D + YP+ K + T E+LR     RPR+N  +A  R+R+  AYA H F Q QGF+Y HTPI+T SDCEGAGEMF+VTTL   A  + +E
Sbjct:  102 GMSD-SDYPLQKKRHTFEYLRTIAHLRPRSNAFSATFRVRSVAAYAIHKFFQDQGFVYTHTPILTGSDCEGAGEMFRVTTLDMMAPPIAEE 191          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOK5 (Asparaginyl-tRNA synthetase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 45/86 (52.33%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   28 AKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            ++YP+ K + TLE+LR     RPR+NT +AV R+R+  AYA H F Q++ F+Y++TPIIT SDCEGAGEMF++TT+  D + + KE
Sbjct:  104 SEYPLQKKRHTLEYLRTIAHLRPRSNTFSAVFRVRSIAAYAVHKFFQEKDFVYVNTPIITGSDCEGAGEMFRITTM--DLNNVPKE 187          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOB8 (Asparaginyl-tRNA synthetase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 46/84 (54.76%), Postives = 56/84 (66.67%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            YP+ K + T E+LR     RPR+N  AA  R+R+  AYA H F Q Q F+Y HTPIIT SDCEGAGEMF+VTTL     +L K+
Sbjct:  107 YPLQKKRHTFEYLRTIAHLRPRSNAFAATFRVRSVAAYAIHKFFQDQNFVYTHTPIITGSDCEGAGEMFRVTTLDPKTPELSKD 190          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BORBU (Asparaginyl-tRNA synthetase OS=Borrelia burgdorferi GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  DP  YP+ K + + EFLR+    R RTNT  A+AR+RN ++Y  H + QK GF YI+TPIIT++D EGAGEMF+V+TL
Sbjct:  102 IGETDPETYPLQKKRHSFEFLREIPHLRIRTNTFGAIARVRNKISYKIHEYFQKNGFFYINTPIITSNDGEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BORAP (Asparaginyl-tRNA synthetase OS=Borrelia afzelii (strain PKo) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.113e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  DP  YP+ K + T EFLR+    R RTNT  AVAR+R+ ++Y  H + QK GF YI+TPIIT++D EGAGEMF+V+TL
Sbjct:   98 IGEADPKTYPLQKKRHTFEFLREIPHLRIRTNTFGAVARVRSKISYKIHEYFQKNGFFYINTPIITSNDGEGAGEMFRVSTL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACV8 (Asparaginyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=asnS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.454e-19
Identity = 45/73 (61.64%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            YP+ K   T+EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF Y HTPIIT SDCEGAG+MFQVTT
Sbjct:  107 YPLQKKGHTMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHERGFFYFHTPIITASDCEGAGQMFQVTT 179          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_GEOUR8.523e-2052.94Asparaginyl-tRNA synthetase OS=Geobacter uraniired... [more]
SYN_CLOPS8.523e-2052.75Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_HAHCH1.113e-1955.42Asparaginyl-tRNA synthetase OS=Hahella chejuensis ... [more]
SYN_CLOPE1.113e-1952.75Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOP11.113e-1952.75Asparaginyl-tRNA synthetase OS=Clostridium perfrin... [more]
SYN_CLOK51.113e-1952.33Asparaginyl-tRNA synthetase OS=Clostridium kluyver... [more]
SYN_CLOB81.113e-1954.76Asparaginyl-tRNA synthetase OS=Clostridium beijeri... [more]
SYN_BORBU1.113e-1953.66Asparaginyl-tRNA synthetase OS=Borrelia burgdorfer... [more]
SYN_BORAP1.113e-1954.88Asparaginyl-tRNA synthetase OS=Borrelia afzelii (s... [more]
SYN_BACV81.454e-1961.64Asparaginyl-tRNA synthetase OS=Bacteroides vulgatu... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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