CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BACTN (Asparaginyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=asnS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K   ++EFLR+    RPRTNT  AV RIR+ +A A H F  ++GF Y HTPIIT SDCEGAG+MFQVTT+
Sbjct:  107 YPLQKKGHSMEFLREIAHLRPRTNTFGAVFRIRHNMAIAIHKFFHEKGFFYFHTPIITGSDCEGAGQMFQVTTM 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ALKOO (Asparaginyl-tRNA synthetase OS=Alkaliphilus oremlandii (strain OhILAs) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.230e-19
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K + T EFLR+    RPR+NT +AV R+R+  A+A H F Q++GF+Y HTPIIT SD EGAGEMF++TTL
Sbjct:  106 YPLQKKRHTFEFLREIAHLRPRSNTFSAVFRVRSLAAFAIHQFFQERGFVYTHTPIITGSDAEGAGEMFRITTL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHESW (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain W3-18-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEPC (Asparaginyl-tRNA synthetase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEFN (Asparaginyl-tRNA synthetase OS=Shewanella frigidimarina (strain NCIMB 400) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMSAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHQEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEB9 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS195) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEB8 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS185) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEB5 (Asparaginyl-tRNA synthetase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=asnS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  ++GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHEEGFIWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XANOR (Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI    +T EFLR+    RPRTN   AV RIRN LA A H F  + GF +I TPIITTSD EGAG+MF+V+TL
Sbjct:   98 VGWVEDPLTYPIQPKPMTPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHQNGFNWISTPIITTSDAEGAGQMFRVSTL 180          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XANOM (Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI    +T EFLR+    RPRTN   AV RIRN LA A H F  + GF +I TPIITTSD EGAG+MF+V+TL
Sbjct:   98 VGWVEDPLTYPIQPKPMTPEFLREVAHLRPRTNLFGAVTRIRNCLAQAVHRFFHQNGFNWISTPIITTSDAEGAGQMFRVSTL 180          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_BACTN4.230e-1959.46Asparaginyl-tRNA synthetase OS=Bacteroides thetaio... [more]
SYN_ALKOO4.230e-1958.11Asparaginyl-tRNA synthetase OS=Alkaliphilus oremla... [more]
SYN_SHESW7.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHEPC7.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella putrefac... [more]
SYN_SHEFN7.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella frigidim... [more]
SYN_SHEB97.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]
SYN_SHEB87.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]
SYN_SHEB57.215e-1953.85Asparaginyl-tRNA synthetase OS=Shewanella baltica ... [more]
SYN_XANOR9.423e-1959.04Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae ... [more]
SYN_XANOM9.423e-1959.04Asparaginyl-tRNA synthetase OS=Xanthomonas oryzae ... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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