CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_CLOB1 (Asparaginyl-tRNA synthetase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.231e-18
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   34 YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            YP+ K + T E+LR     RPR+N  +AV R+R+  AYA H F Q++GF+Y +TPIIT SDCEGAGEMFQ+TT+
Sbjct:  106 YPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVRSLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_VIBPA (Asparaginyl-tRNA synthetase OS=Vibrio parahaemolyticus GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   10 VGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ A+ YP+ KT+ ++E+LR+    RPRTN I AVAR+RN L+ A H F  +QG+ ++  P+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVEDAETYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRNCLSQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHESR (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-7) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  + GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHESM (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  + GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHESA (Asparaginyl-tRNA synthetase OS=Shewanella sp. (strain ANA-3) GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  + GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEON (Asparaginyl-tRNA synthetase OS=Shewanella oneidensis GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN L+ A H F  + GF+++ TP+IT SDCEGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_FUSNN (Asparaginyl-tRNA synthetase OS=Fusobacterium nucleatum subsp. nucleatum GN=asnS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.607e-18
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   31 KYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            +YP+   + T E+LR +   R RTNT +AV R+R+ LAYA H F Q+  F Y+H PIIT SD EGAGEMF++TTL  D +K+ K+
Sbjct:  103 EYPLQNKRHTFEYLRTKAHLRARTNTFSAVFRVRSVLAYALHKFFQENNFAYVHAPIITGSDAEGAGEMFRITTL--DLNKVPKK 185          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHEHH (Asparaginyl-tRNA synthetase OS=Shewanella halifaxensis (strain HAW-EB4) GN=asnS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+RN L+ A H F  +QG++++ TP+IT SD EGAGEMF+V+TL
Sbjct:  100 VGFVEDPDTYPMAAKRHSIEYLRELAHLRPRTNIIGAVARVRNCLSQAIHRFYNEQGYIWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BLOPB (Asparaginyl-tRNA synthetase OS=Blochmannia pennsylvanicus (strain BPEN) GN=asnS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.099e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTT 252
            DP+ YPI   K T+E+LR+    RPRTNTI AVARIR+ L+ A H FL KQGF++I TPIIT  D EG+ +MF V+T
Sbjct:  105 DPSTYPITAKKHTMEYLREVSHLRPRTNTIGAVARIRDTLSQAIHNFLHKQGFIWIPTPIITACDTEGSSKMFCVST 181          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_VIBF1 (Asparaginyl-tRNA synthetase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=asnS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   10 VGMVDPAK-YPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V+ A+ YP+ KT+ ++E+LR+    RPRTN I AVAR+RN L+ A H F  +QG+ ++  P+IT SD EGAGEMF+V+TL
Sbjct:  100 VGWVEDAETYPMAKTRHSIEYLREVAHLRPRTNVIGAVARVRNCLSQAIHRFYHEQGYFWMSAPLITASDAEGAGEMFRVSTL 182          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_CLOB11.231e-1856.76Asparaginyl-tRNA synthetase OS=Clostridium botulin... [more]
SYN_VIBPA1.607e-1853.01Asparaginyl-tRNA synthetase OS=Vibrio parahaemolyt... [more]
SYN_SHESR1.607e-1853.85Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHESM1.607e-1853.85Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHESA1.607e-1853.85Asparaginyl-tRNA synthetase OS=Shewanella sp. (str... [more]
SYN_SHEON1.607e-1853.85Asparaginyl-tRNA synthetase OS=Shewanella oneidens... [more]
SYN_FUSNN1.607e-1851.76Asparaginyl-tRNA synthetase OS=Fusobacterium nucle... [more]
SYN_SHEHH2.099e-1853.01Asparaginyl-tRNA synthetase OS=Shewanella halifaxe... [more]
SYN_BLOPB2.099e-1858.44Asparaginyl-tRNA synthetase OS=Blochmannia pennsyl... [more]
SYN_VIBF12.742e-1853.01Asparaginyl-tRNA synthetase OS=Vibrio fischeri (st... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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