CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHESH (Asparaginyl-tRNA synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=asnS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E LR+    RPRTN I AVAR+RN+L+ A H F  +QGF+++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEHLRELAHLRPRTNIIGAVARVRNSLSQAIHRFYHEQGFIWVSTPLITASDAEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_BAUCH (Asparaginyl-tRNA synthetase OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=asnS PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.742e-18
Identity = 43/78 (55.13%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +P  YPI   K +LEFLR+    RPRTN I AV R+R+ LA A H F+  +GF ++ TP+ITT +CEGAGEMF+V+TL
Sbjct:  106 NPETYPITAKKHSLEFLREVAHLRPRTNIIGAVTRVRHTLAQAIHRFMHIEGFFWVSTPLITTFNCEGAGEMFRVSTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SODGM (Asparaginyl-tRNA synthetase OS=Sodalis glossinidius (strain morsitans) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.581e-18
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F+ +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSVEYLREVAHLRPRTNLIGAVARVRHTLAQAIHRFMDEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XYLFT (Asparaginyl-tRNA synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI   + +LEFLR+    RPRTN   AVARIR+ L+ A H F  + G+ +I TPIITTSD EGAG+MF+V+TL
Sbjct:  100 VGWVEDPETYPIQPKQHSLEFLREVAHLRPRTNLFGAVARIRHCLSQAVHRFFHENGYYWITTPIITTSDAEGAGQMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_XYLFA (Asparaginyl-tRNA synthetase OS=Xylella fastidiosa GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            VG V DP  YPI   + +LEFLR+    RPRTN   AVARIR+ L+ A H F  + G+ +I TPIITTSD EGAG+MF+V+TL
Sbjct:  100 VGWVEDPETYPIQPKQHSLEFLREVAHLRPRTNLFGAVARIRHCLSQAVHRFFHENGYYWITTPIITTSDAEGAGQMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHISS (Asparaginyl-tRNA synthetase OS=Shigella sonnei (strain Ss046) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHIFL (Asparaginyl-tRNA synthetase OS=Shigella flexneri GN=asnS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHIF8 (Asparaginyl-tRNA synthetase OS=Shigella flexneri serotype 5b (strain 8401) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHIDS (Asparaginyl-tRNA synthetase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SHIBS (Asparaginyl-tRNA synthetase OS=Shigella boydii serotype 4 (strain Sb227) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_SHESH2.742e-1853.85Asparaginyl-tRNA synthetase OS=Shewanella sedimini... [more]
SYN_BAUCH2.742e-1855.13Asparaginyl-tRNA synthetase OS=Baumannia cicadelli... [more]
SYN_SODGM3.581e-1853.85Asparaginyl-tRNA synthetase OS=Sodalis glossinidiu... [more]
SYN_XYLFT4.677e-1856.63Asparaginyl-tRNA synthetase OS=Xylella fastidiosa ... [more]
SYN_XYLFA4.677e-1856.63Asparaginyl-tRNA synthetase OS=Xylella fastidiosa ... [more]
SYN_SHISS4.677e-1853.85Asparaginyl-tRNA synthetase OS=Shigella sonnei (st... [more]
SYN_SHIFL4.677e-1853.85Asparaginyl-tRNA synthetase OS=Shigella flexneri G... [more]
SYN_SHIF84.677e-1853.85Asparaginyl-tRNA synthetase OS=Shigella flexneri s... [more]
SYN_SHIDS4.677e-1853.85Asparaginyl-tRNA synthetase OS=Shigella dysenteria... [more]
SYN_SHIBS4.677e-1853.85Asparaginyl-tRNA synthetase OS=Shigella boydii ser... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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