CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SALTY (Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SALTI (Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SALPA (Asparaginyl-tRNA synthetase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SALCH (Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PASMU (Asparaginyl-tRNA synthetase OS=Pasteurella multocida GN=asnS PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL  D + L ++
Sbjct:  106 DPETYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFHEQGFYWVATPLITASDTEGAGEMFRVSTL--DLENLPRD 191          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_MANSM (Asparaginyl-tRNA synthetase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 47/93 (50.54%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   10 VGMV-DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKE 285
            VG V DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL  D + L ++
Sbjct:  101 VGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNIIGAVARVRHCLAQAIHRFFNEQGFYWVATPLITASDTEGAGEMFRVSTL--DLENLPRD 191          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_KLEP7 (Asparaginyl-tRNA synthetase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOUT (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain UTI89 / UPEC) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOLI (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain K12) GN=asnS PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_ECOLC (Asparaginyl-tRNA synthetase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=asnS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.677e-18
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:   22 DPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            DP  YP+   + ++E+LR+    RPRTN I AVAR+R+ LA A H F  +QGF ++ TP+IT SD EGAGEMF+V+TL
Sbjct:  105 DPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL 182          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYN_SALTY4.677e-1853.85Asparaginyl-tRNA synthetase OS=Salmonella typhimur... [more]
SYN_SALTI4.677e-1853.85Asparaginyl-tRNA synthetase OS=Salmonella typhi GN... [more]
SYN_SALPA4.677e-1853.85Asparaginyl-tRNA synthetase OS=Salmonella paratyph... [more]
SYN_SALCH4.677e-1853.85Asparaginyl-tRNA synthetase OS=Salmonella cholerae... [more]
SYN_PASMU4.677e-1850.00Asparaginyl-tRNA synthetase OS=Pasteurella multoci... [more]
SYN_MANSM4.677e-1850.54Asparaginyl-tRNA synthetase OS=Mannheimia succinic... [more]
SYN_KLEP74.677e-1853.85Asparaginyl-tRNA synthetase OS=Klebsiella pneumoni... [more]
SYN_ECOUT4.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]
SYN_ECOLI4.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]
SYN_ECOLC4.677e-1853.85Asparaginyl-tRNA synthetase OS=Escherichia coli (s... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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