CX294136

Overview
NameCX294136
Unique NameCX294136
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294136_ssr28 microsatellite CX294136_ssr28:28..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14798 contig Ccv1_Contig14798:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_SCHPO (60S ribosomal protein L14 OS=Schizosaccharomyces pombe GN=rpl14 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   85 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 459
            FKRYVE+GRV LV  G+  GKL VIVD++D  RAL+D+P  +  R  + +  + LT I + + R  R   + +  +  DV NKW +S+W +KL  +K R+ LNDFDRF +M  K ++   V   +AK
Sbjct:    4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVMKLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQVNVAVAK 130          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_DROME (60S ribosomal protein L14 OS=Drosophila melanogaster GN=RpL14 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA*NFSRV 498
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A  ++D+K +W+ S W  K     +R++LNDFDRFKL  AK ++  L+      LK+   A    RV
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWTESDLKAQWKVSPWSVKAQNICKRSSLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKADGTPRV 142          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14B_YEAST (60S ribosomal protein L14-B OS=Saccharomyces cerevisiae GN=RPL14B PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   91 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 459
            R VE+GRV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAGVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14A_YEAST (60S ribosomal protein L14-A OS=Saccharomyces cerevisiae GN=RPL14A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:   91 RYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAK 459
            R VE+GRV L+  G+  GKL  IV+++DQ + L+D P   + R  +N  ++ LT +   + R  R  ++ +    A V  KW  SSW +K+  ++RRAAL DF+RF++M+ + +K   V++ LAK
Sbjct:   13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQVMVLRKQKRYTVKKALAK 137          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_DICDI (60S ribosomal protein L14 OS=Dictyostelium discoideum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   85 FKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKL 462
            F  +VEIGRV ++NYG+   K  VI+DVLDQNRALV  P   + R  +NFK ++LT +K++I R  R  +LI A++ AD++ K    S  +K+  +  ++   DF+RFK  L + K    V  E+ KL
Sbjct:    5 FSLFVEIGRVVVINYGEYINKTAVIIDVLDQNRALVAGPHSGVERHIINFKWINLTPLKVNIQRGARINTLIAAIKAADLETKIAALSAVKKINARATKSNQTDFERFKANLIRRKLNKKVSGEVKKL 132          
BLAST of CX294136 vs. ExPASy Swiss-Prot
Match: RL14_DROVI (60S ribosomal protein L14 OS=Drosophila virilis GN=RpL14 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   79 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELAKLKRENAA*NFSRV 498
            MPF+R+V+ GR+A  + G   G+LV IVDV+DQNR LVD P   + R +     L LT  +I        + + +A   +D+K +W+ S W  K     +R+ LNDFDRFKL  AK ++  L+      LK+   +    R+
Sbjct:    1 MPFERFVQTGRIAKASAGPLKGRLVAIVDVIDQNRVLVDGPLTGVPRQEYRLNNLHLTKYRIKFPYTAPTRIVRKAWVDSDLKAQWKVSPWSVKAQNICKRSQLNDFDRFKLRYAKRQRNKLLTIAFNTLKKRTKSDGTPRI 142          
The following BLAST results are available for this feature:
BLAST of CX294136 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL14_SCHPO2.828e-2042.5260S ribosomal protein L14 OS=Schizosaccharomyces p... [more]
RL14_DROME4.515e-1838.0360S ribosomal protein L14 OS=Drosophila melanogast... [more]
RL14B_YEAST7.701e-1837.6060S ribosomal protein L14-B OS=Saccharomyces cerev... [more]
RL14A_YEAST1.006e-1737.6060S ribosomal protein L14-A OS=Saccharomyces cerev... [more]
RL14_DICDI1.314e-1741.4160S ribosomal protein L14 OS=Dictyostelium discoid... [more]
RL14_DROVI4.991e-1736.6260S ribosomal protein L14 OS=Drosophila virilis GN... [more]

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Properties
Property NameValue
Genbank descriptionC05011E07SK AbsAOv1 Citrus clementina cDNA clone C05011E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294136 ID=CX294136; Name=CX294136; organism=Citrus clementina; type=EST; length=556bp
GGAAACCCTAAATCGAAGCCTCTTGCCTCATTCATTCATCTCCTCGCTCC
TCCGGCAGAGCCTTGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTGG
AGATAGGAAGAGTTGCTCTCGTTAATTACGGGAAGGACTATGGGAAGCTT
GTGGTCATCGTCGATGTCCTTGATCAAAACAGGGCTCTTGTTGATGCCCC
TGATATGGTGAGGAGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGATA
TTAAGATTGACATCAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGCC
ATGGAGAAGGCTGATGTGAAGAACAAATGGGAAAACAGCTCCTGGGGCAG
GAAGCTGATTGTCCAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGGT
TCAAGCTCATGTTGGCCAAGATCAAGAAGGGTGGACTTGTTCGACAGGAG
CTTGCAAAACTCAAGAGGGAGAATGCAGCATAGAATTTCTCTCGTGTTCC
CCTTTCTGGTTTTAGTTCTTACGCTTCATTTGATTCTATTATGTATTGAT
TATATG
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