CX294193

Overview
NameCX294193
Unique NameCX294193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length295
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP12_ORYSJ (Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I N+   WDDHWIFWVGPF+GA LA++YHQVVI AIPFK
Sbjct:  247 IYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.168e-11
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    4 AGICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            A I N+   W DHWIFWVGPF+GA LA++YHQV+I AIPFK
Sbjct:  244 AVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFK 284          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.797e-11
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            + N+   W+DHWIFWVGPF+GA LA++YH V+I A+PFK
Sbjct:  247 VYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFK 285          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.571e-11
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            + N+   W DHWIFWVGPF+GA LA++YH VVI AIPFK
Sbjct:  247 VYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFK 285          
The following BLAST results are available for this feature:
BLAST of CX294193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIP12_ORYSJ1.056e-1274.36Probable aquaporin PIP1-2 OS=Oryza sativa subsp. j... [more]
PIP11_MAIZE1.168e-1168.29Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP15_MAIZE5.797e-1161.54Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ7.571e-1166.67Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05013C11SK AbsAOv1 Citrus clementina cDNA clone C05013C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294193 ID=CX294193; Name=CX294193; organism=Citrus clementina; type=EST; length=295bp
ACGGCCGGGATCTGCAACAAGGACCGCGGTTGGGATGACCACTGGATCTT
CTGGGTGGGACCATTCCTTGGAGCTGGACTCGCATCTTTGTACCACCAAG
TCGTGATCACAGCCATTCCCTTCAAATGAAGCTGATCGCTTCATCAACGT
TCGTGATTGCACCTGCATTTGTTTATGGCTGTTGCTGGTTTGCTTATGTG
TATTATAAAATATTAATTAGTCCTTTGTTCAAATCTGCTGGTGCTGGACC
TGGGCCTGCTTCTCTGTTTTCCTTCCCTAAAACGTTTTTTTTTTT
back to top