CX294200 | Citrus Genome Database

Overview


Name	CX294200
Unique Name	CX294200
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	527

Libraries


Library Name	Type
AbsAOv1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_CALFG (30S ribosomal protein S3, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.121e-14
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG EGIA IEIQK++DLIQVII IGFP  L+E   R IEELQMNV
Sbjct:   52 RISSGFEGIAHIEIQKKMDLIQVIISIGFPNFLIEGGTRGIEELQMNV 99

HSP 2 Score: 28.8758 bits (63), Expect = 3.121e-14
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PK+YC GLQED+K
Sbjct:   25 QPKSYCRGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_PHAAN (30S ribosomal protein S3, chloroplastic OS=Phaseolus angularis GN=rps3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.122e-14
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSGVEGI  I+IQKRIDLIQVIIY+GFPKLL+E +P++IEELQ N+
Sbjct:   52 RISSGVEGIGEIKIQKRIDLIQVIIYMGFPKLLIEGKPQKIEELQTNM 99

HSP 2 Score: 20.7866 bits (42), Expect = 3.122e-14
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +P  Y E +QED+K
Sbjct:   25 QPTKYSENIQEDKK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_DIOEL (30S ribosomal protein S3, chloroplastic OS=Dioscorea elephantipes GN=rps3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.122e-14
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG EGIARI I+KRIDLIQVII+IGFP LL+E R R IEELQ+NV
Sbjct:   52 RISSGFEGIARIRIKKRIDLIQVIIHIGFPNLLIEGRTRGIEELQINV 99

HSP 2 Score: 23.8682 bits (50), Expect = 3.122e-14
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +P+N+  GLQED+K
Sbjct:   25 QPRNFSTGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_ILLOL (30S ribosomal protein S3, chloroplastic OS=Illicium oligandrum GN=rps3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.055e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            R+SSG EGIARI IQK+IDLIQVII+IGFP  L+E R R IEELQ+NV
Sbjct:   52 RVSSGFEGIARIGIQKKIDLIQVIIHIGFPHFLIEGRARGIEELQINV 99

HSP 2 Score: 26.1794 bits (56), Expect = 4.055e-14
Identity = 10/14 (71.43%), Postives = 12/14 (85.71%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PKNY  GLQED+K
Sbjct:   25 QPKNYSGGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_NYMAL (30S ribosomal protein S3, chloroplastic OS=Nymphaea alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.055e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG EGIARI+I+KRIDLIQVII+IGF  +L+E R R IEELQ NV
Sbjct:   52 RISSGFEGIARIDIKKRIDLIQVIIHIGFANMLMEGRARGIEELQTNV 99

HSP 2 Score: 27.335 bits (59), Expect = 4.055e-14
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PKNY +GLQED+K
Sbjct:   25 QPKNYSKGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_NUPAD (30S ribosomal protein S3, chloroplastic OS=Nuphar advena GN=rps3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.055e-14
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSG EGIARI+I+KRIDLIQVII+IGF  +L+E R R IEELQ NV
Sbjct:   52 RISSGFEGIARIDIKKRIDLIQVIIHIGFANMLIEGRARGIEELQTNV 99

HSP 2 Score: 27.335 bits (59), Expect = 4.055e-14
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PKNY +GLQED+K
Sbjct:   25 QPKNYSKGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_SOYBN (30S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.057e-14
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            RISSGVEGI +I+IQKRIDLIQVIIY+GFPKLL+E + ++IEELQ N+
Sbjct:   52 RISSGVEGIGQIKIQKRIDLIQVIIYMGFPKLLIEGKSQKIEELQTNM 99

HSP 2 Score: 23.0978 bits (48), Expect = 4.057e-14
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +P NY E +QED+K
Sbjct:   25 QPTNYSENIQEDKK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_PHAAO (30S ribosomal protein S3, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps3 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.268e-14
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            +ISSG EGIA I IQKRID IQVIIYIGFP LL+E R R +EELQMNV
Sbjct:   52 KISSGFEGIAYIGIQKRIDFIQVIIYIGFPNLLIEGRTRGVEELQMNV 99

HSP 2 Score: 24.6386 bits (52), Expect = 5.268e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            KPKN+  GLQED++
Sbjct:   25 KPKNFSIGLQEDER 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_ACOCL (30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.892e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1

Query:   85 RISSGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQMNV 228
            R+SSG EGIARIEI+KRIDLIQVIIYIGFP L +E R + I+ELQM+V
Sbjct:   52 RLSSGFEGIARIEIKKRIDLIQVIIYIGFPNLFIEGRTQGIKELQMSV 99

HSP 2 Score: 24.2534 bits (51), Expect = 8.892e-14
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PK+Y  GLQED+K
Sbjct:   25 QPKSYSMGLQEDEK 38

[Close]

BLAST of CX294200 vs. ExPASy Swiss-Prot
Match: RR3_OENEH (30S ribosomal protein S3, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps3 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.155e-13
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 1

Query:   94 SGVEGIARIEIQKRIDLIQVIIYIGFPKLLLENRPRRIEELQ 219
            SGVEGIARIEI+KRIDLIQV IY+GFPKLL+E+  RRIEELQ
Sbjct:   57 SGVEGIARIEIRKRIDLIQVKIYMGFPKLLIEDGTRRIEELQ 98

HSP 2 Score: 26.9498 bits (58), Expect = 1.155e-13
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:    3 KPKNYCEGLQEDQK 44
            +PK+Y +GLQEDQK
Sbjct:   25 QPKDYSDGLQEDQK 38

The following BLAST results are available for this feature:

BLAST of CX294200 vs. ExPASy Swiss-Prot

BLAST of CX294200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58


Match Name	E-value	Identity	Description
RR3_CALFG	3.121e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Calycan...	[more]
RR3_PHAAN	3.122e-14	77.08	30S ribosomal protein S3, chloroplastic OS=Phaseol...	[more]
RR3_DIOEL	3.122e-14	79.17	30S ribosomal protein S3, chloroplastic OS=Dioscor...	[more]
RR3_ILLOL	4.055e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Illiciu...	[more]
RR3_NYMAL	4.055e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Nymphae...	[more]
RR3_NUPAD	4.055e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Nuphar ...	[more]
RR3_SOYBN	4.057e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Glycine...	[more]
RR3_PHAAO	5.268e-14	77.08	30S ribosomal protein S3, chloroplastic OS=Phalaen...	[more]
RR3_ACOCL	8.892e-14	75.00	30S ribosomal protein S3, chloroplastic OS=Acorus ...	[more]
RR3_OENEH	1.155e-13	83.33	30S ribosomal protein S3, chloroplastic OS=Oenothe...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05013D07SK AbsAOv1 Citrus clementina cDNA clone C05013D07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294200 ID=CX294200; Name=CX294200; organism=Citrus clementina; type=EST; length=527bp
CAAAACCAAAAAACTATTGCGAGGGTCTACAAGAAGATCAAAAAAATACG
AAACTTTATTAAGAATTATATAAAAAAAAATAGCAGAATATCTTCCGGTG
TTGAGGGAATTGCACGGATAGAGATTCAAAAAAGAATTGATCTAATTCAA
GTTATAATCTATATAGGGTTCCCAAAATTATTACTAGAAAATAGACCGCG
AAGAATTGAAGAATTACAGATGAATGTATAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAATTTTTCGCCCCCCCCCCGCCTTGTCATTTTTAATTTGGGAA
CTTTTTTGACTGGCGCCCCATTTAGGTTCTTTTTGGCCATTTCCCCCATA
GGGGGGGTTTGAAAANCNNANCCGGTTAGCCTAATGTCGAGAAAGATGGT
GGATTGTGGTTCGGATGATGAGTTTACGTTCCAAATGCTATAAATATTGT
CTGTATGTAGTAATTGAAATCTTTACATGGAGATTCTTGAGCCTAAGTTG
TATATTTGAATTCGCTTGGAACTGGTT