CX294208
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20 Identity = 49/133 (36.84%), Postives = 83/133 (62.41%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 +L+++V F ++++ LDA+C C+ + T T++ REGDP++EM+FV++G++ + T +SG +S L+ GDF GEEL+ WAL + ++P S R+++AL+ V+AF L A+DLK V Sbjct: 442 SLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNS-------------TTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFV 561
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20 Identity = 50/134 (37.31%), Postives = 85/134 (63.43%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410 L+++V F ++++ LDA+C+ + P+ T+ T++IREGDP++EM+F+++G++ + T +SG +S L+ GDF GEEL+ WAL + ++P S RT++ L+ V+AF L A+DLK V N Sbjct: 451 LVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVAN 571
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19 Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410 +L+++V F ++++ LDA+C+ + + T+ +++REGDP+ EM+F+++GKL + T ++G +S L+ GDF GEEL+ WAL + + ++P S RT++AL V+AF L A DLK V N Sbjct: 474 DLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSI-------------TLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVAN 595
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2) HSP 1 Score: 90.5077 bits (223), Expect = 5.818e-18 Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 LLKKV F+ +++ LDALC +K +TE ++++REG+P+++M+F+++G L + T ++G +S DL+ GDF G +L+ WAL D S P S+RT+QALT V+ F+L ADDLK V Sbjct: 471 LLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLVA-GDFCG-DLLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFV 587
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16 Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 3 Query: 3 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 ++L+ KV FR ++++ LD +CD KP F++ +IREGDP+ MIF+++G++ K IQS S K L+ G + G+EL+ W LR F +P S+ T L N++AF L ++DL+ + Sbjct: 523 FDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRV-----KRIQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYI 641
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15 Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 LLKKV + +++ LDALC +K +TE ++++REG+P+++M+F+++G L + T ++G +S DL+ GD G +L+ WAL S P S+RT+QALT V+ F++ ADDLK V Sbjct: 429 LLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLIA-GDSCG-DLLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFV 545
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEV-TLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 ++LK+V +++ L+A+CD VK F+ ++ ++REG P++EM+ V +GKL+ ST+ H+ N LQDGD GE L + + +P S RT+ LT V+ F+L+ DD+K + Sbjct: 428 DMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLK----------STTGSHEMGVRNNCCD---LQDGDICGELLFNGS-------RLPTSTRTVMTLTEVEGFILLPDDIKFI 541
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12 Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 +L+++V F+ ++++ L+ +CD VK FT+ + +EGD + M+FVV+G L QS D + +L G+F G+EL+ W LR F +P S+ T+ L +AF L A+D+K V Sbjct: 489 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHL--------QSSQLLRD-------GVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYV 606 The following BLAST results are available for this feature:
BLAST of CX294208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294208 ID=CX294208; Name=CX294208; organism=Citrus clementina; type=EST; length=555bpback to top |