CX294208

Overview
NameCX294208
Unique NameCX294208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig95 contig Ccv1_Contig95:123..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 49/133 (36.84%), Postives = 83/133 (62.41%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            +L+++V  F ++++  LDA+C C+  +  T  T++ REGDP++EM+FV++G++ + T    +SG  +S               L+ GDF GEEL+ WAL    + ++P S R+++AL+ V+AF L A+DLK V
Sbjct:  442 SLVRRVPFFSQMDDQLLDAICGCLVSSLSTAGTYIFREGDPVNEMLFVIRGQIESSTTNGGRSGFFNS-------------TTLRPGDFCGEELLTWALMPNSTLNLPSSTRSVRALSEVEAFALSAEDLKFV 561          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 50/134 (37.31%), Postives = 85/134 (63.43%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410
            L+++V  F ++++  LDA+C+ + P+  T+ T++IREGDP++EM+F+++G++ + T    +SG  +S               L+ GDF GEEL+ WAL    + ++P S RT++ L+ V+AF L A+DLK V N
Sbjct:  451 LVRRVPFFAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNS-------------ITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFVAN 571          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.808e-19
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410
            +L+++V  F ++++  LDA+C+ +  +  T+  +++REGDP+ EM+F+++GKL + T    ++G  +S               L+ GDF GEEL+ WAL  + + ++P S RT++AL  V+AF L A DLK V N
Sbjct:  474 DLVRRVPLFAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSI-------------TLRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFVAN 595          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC3_ARATH (Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.818e-18
Identity = 54/132 (40.91%), Postives = 83/132 (62.88%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            LLKKV  F+ +++  LDALC  +K   +TE ++++REG+P+++M+F+++G L + T    ++G  +S             DL+  GDF G +L+ WAL D  S   P S+RT+QALT V+ F+L ADDLK V
Sbjct:  471 LLKKVPWFQAMDDRLLDALCARLKTVLYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLVA-GDFCG-DLLTWAL-DPLSSQFPISSRTVQALTEVEGFLLSADDLKFV 587          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 47/134 (35.07%), Postives = 76/134 (56.72%), Query Frame = 3
Query:    3 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            ++L+ KV  FR ++++ LD +CD  KP  F++   +IREGDP+  MIF+++G++     K IQS S          K       L+ G + G+EL+ W LR  F   +P S+ T   L N++AF L ++DL+ +
Sbjct:  523 FDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRV-----KRIQSLS----------KGVLATSTLEPGGYLGDELLSWCLRRPFLDRLPPSSATFVCLENIEAFSLGSEDLRYI 641          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG11_ARATH (Cyclic nucleotide-gated ion channel 11 OS=Arabidopsis thaliana GN=CNGC11 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15
Identity = 50/132 (37.88%), Postives = 80/132 (60.61%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            LLKKV   + +++  LDALC  +K   +TE ++++REG+P+++M+F+++G L + T    ++G  +S             DL+  GD  G +L+ WAL    S   P S+RT+QALT V+ F++ ADDLK V
Sbjct:  429 LLKKVPLLQAMDDQLLDALCARLKTVHYTEKSYIVREGEPVEDMLFIMRGNLISTTTYGGRTGFFNS------------VDLIA-GDSCG-DLLTWALYS-LSSQFPISSRTVQALTEVEGFVISADDLKFV 545          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG12_ARATH (Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEV-TLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            ++LK+V     +++   L+A+CD VK  F+  ++ ++REG P++EM+ V +GKL+          ST+  H+     N      LQDGD  GE L + +        +P S RT+  LT V+ F+L+ DD+K +
Sbjct:  428 DMLKRVPWLNIMDDGWLLEAVCDRVKSVFYLANSFIVREGHPVEEMLIVTRGKLK----------STTGSHEMGVRNNCCD---LQDGDICGELLFNGS-------RLPTSTRTVMTLTEVEGFILLPDDIKFI 541          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.230e-12
Identity = 43/133 (32.33%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            +L+++V  F+ ++++ L+ +CD VK   FT+   + +EGD +  M+FVV+G L        QS     D         +   +L  G+F G+EL+ W LR  F   +P S+ T+  L   +AF L A+D+K V
Sbjct:  489 DLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHL--------QSSQLLRD-------GVKSCCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTLVTLETTEAFGLDAEDVKYV 606          
The following BLAST results are available for this feature:
BLAST of CX294208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNG18_ARATH2.790e-2036.84Putative cyclic nucleotide-gated ion channel 18 OS... [more]
CNG16_ARATH2.790e-2037.31Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG14_ARATH1.808e-1936.30Probable cyclic nucleotide-gated ion channel 14 OS... [more]
CNGC3_ARATH5.818e-1840.91Probable cyclic nucleotide-gated ion channel 3 OS=... [more]
CNGC2_ARATH1.433e-1635.07Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNG11_ARATH3.529e-1537.88Cyclic nucleotide-gated ion channel 11 OS=Arabidop... [more]
CNG12_ARATH3.652e-1232.84Probable cyclic nucleotide-gated ion channel 12 OS... [more]
CNGC4_ARATH6.230e-1232.33Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05013E10SK AbsAOv1 Citrus clementina cDNA clone C05013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294208 ID=CX294208; Name=CX294208; organism=Citrus clementina; type=EST; length=555bp
GCTGGAATCTGCTAAAGAAAGTACAAGGGTTCAGGAAGCTAAATGAAGTA
ACATTGGATGCTCTATGCGATTGCGTAAAACCAACTTTCTTCACCGAGCA
CACTCACTTGATTCGTGAAGGAGACCCAATTGACGAGATGATCTTTGTAG
TGCAAGGCAAACTGCGCACCTACACCTTTAAGGATATACAAAGTGGCTCA
ACAAGCTCTGATCATAAAAGATATGATGGCAAAAACACAAGGAAAGAAGA
TCTTCTGCAAGATGGCGACTTCTATGGAGAAGAACTTATTGACTGGGCTT
TGAGAGACCGCTTCTCATTTGACATCCCTAAGTCAAACAGAACCATTCAA
GCACTTACAAATGTTGATGCCTTTATGCTTATGGCTGATGACTTGAAAAT
TGTATTCAATGACATGATGAATCAGTTAGGTCTCTACGACTAAGGTCTCT
ATGACTAACAAGAACTCGTGGAACTCTACCCAGGAAATTGAGTGGGACTT
GCAGCTGAGGTTTATCCACTCTTCAGCACTAAATCTTTTAATGAATAGTA
CTTTT
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