CX294309

Overview
NameCX294309
Unique NameCX294309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294309_ssr13 microsatellite CX294309_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12170 contig Ccv1_Contig12170:31..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 5.879e-74
Identity = 129/160 (80.62%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G    D+QLER+NVYYNEAS GR+VPRAVLMDLEPGTMD++R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMG--TSDVQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.678e-74
Identity = 131/160 (81.88%), Postives = 139/160 (86.88%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   DLQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDS--DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB8_MAIZE (Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 1.310e-73
Identity = 130/160 (81.25%), Postives = 139/160 (86.88%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G    DLQLER+NVYYNEAS GR+VP AVLMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVG--TSDLQLERVNVYYNEASCGRFVPGAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.710e-73
Identity = 129/160 (80.62%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+HIQGGQCGNQIG+KFWEV+ DEHGVDPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.234e-73
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.234e-73
Identity = 128/160 (80.00%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB8_ARATH (Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TUBB8 PE=2 SV=2)

HSP 1 Score: 274.248 bits (700), Expect = 2.918e-73
Identity = 129/160 (80.62%), Postives = 140/160 (87.50%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y+G+   DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGEN--DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_PEA (Tubulin beta-2 chain (Fragment) OS=Pisum sativum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 2.918e-73
Identity = 130/158 (82.28%), Postives = 138/158 (87.34%), Query Frame = 1
Query:   85 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            EI+HIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   DLQLERINVYYNEAS GRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 EIVHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGD--TDLQLERINVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 156          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 3.810e-73
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD   DLQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYG IFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYDGDS--DLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB9_GOSHI (Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 4.977e-73
Identity = 130/160 (81.25%), Postives = 139/160 (86.88%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD   +LQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDS--ELQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
The following BLAST results are available for this feature:
BLAST of CX294309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB2_MAIZE5.879e-7480.63Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB2_ARATH7.678e-7481.88Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB8_MAIZE1.310e-7381.25Tubulin beta-8 chain OS=Zea mays GN=TUBB8 PE=2 SV=... [more]
TBB_CHLIN1.710e-7380.63Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB_CHLRE2.234e-7380.00Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB1_VOLCA2.234e-7380.00Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB8_ARATH2.918e-7380.63Tubulin beta-8 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_PEA2.918e-7382.28Tubulin beta-2 chain (Fragment) OS=Pisum sativum G... [more]
TBB2_ORYSJ3.810e-7381.25Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB9_GOSHI4.977e-7381.25Tubulin beta-9 chain OS=Gossypium hirsutum PE=2 SV... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015A02SK FlavSen1 Citrus clementina cDNA clone C05015A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294309 ID=CX294309; Name=CX294309; organism=Citrus clementina; type=EST; length=558bp
TCAGATCACATCCTCTCTCTCTCTCTCTCTCTAAATCTTCAATTCATTTT
CTCTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTC
AAGGAGGCCAATGCGGCAACCAAATCGGCTCCAAATTCTGGGAAGTCATT
TGCGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACGGCGT
TGAGGATCTTCAACTGGAGCGAATCAATGTCTATTACAACGAAGCTTCCG
GTGGAAGGTACGTGCCTCGAGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGATAGTATCAGATCCGGCCCGTACGGCCAGATCTTTCGACCTGATAA
CTTCGTTTTTGGACAATCCGGTGCGGGCAATAACTGGGCCAAAGGTCATT
ATACTGAAGGCGCCGAATTGATCGACGCTGTTCTTGACGTCGTTCGTAAG
GAGGCAGAGAACTGTGATTGCTTGCAAGGCTTTCAGGTGTGCCACTCACT
GGGAGGAGGTACAGGTTCTGGCATGGGAACTCTCTTGATATCAAAGATTA
GAGAGGAT
back to top