CX294309

Overview
NameCX294309
Unique NameCX294309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294309_ssr13 microsatellite CX294309_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12170 contig Ccv1_Contig12170:31..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 6.500e-73
Identity = 129/160 (80.62%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD   +LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDN--ELQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_DAUCA (Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 8.489e-73
Identity = 127/160 (79.38%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+   +   DLQL+RINVYYNEASGGRYVPRAVLMDLEPGTMDS+++GP+GQIFRPDNF+FGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENC+CLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGQVLSES--DLQLDRINVYYNEASGGRYVPRAVLMDLEPGTMDSVKTGPHGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCECLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.891e-72
Identity = 130/160 (81.25%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVIC EHG+D TG+  GD   DLQLERINVY+NEASGG+YVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGD--TDLQLERINVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_LUPAL (Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 2.470e-72
Identity = 129/160 (80.62%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD V  LQLER+NVYYNEAS GR+VPRAVLMDLEPGTMDS+RSG YGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYEGDNV--LQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGTYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 3.226e-72
Identity = 129/160 (80.62%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MRE LHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   +LQLERINVYYNEAS GR+V RAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDS--ELQLERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 4.213e-72
Identity = 126/160 (78.75%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MRE++HIQGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQ+ H              ISKIRE+
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 5.502e-72
Identity = 130/160 (81.25%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEV+  EHG+D TG+Y GD   +LQLER+NVYYNEAS GRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDS--ELQLERVNVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.186e-72
Identity = 126/160 (78.75%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              ISK+RE+
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.186e-72
Identity = 127/160 (79.38%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQ+ H              ISKIRE+
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREE 158
[Close]
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 7.186e-72
Identity = 125/160 (78.12%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREI+H+QGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GPYGQ+FRPDNF+FGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              I+K+RE+
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSMGGGTGSGMGTLLIAKVREE 158
The following BLAST results are available for this feature:
BLAST of CX294309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB1_LUPAL6.500e-7380.63Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB2_DAUCA8.489e-7379.38Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=... [more]
TBB9_ARATH1.891e-7281.25Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_LUPAL2.470e-7280.63Tubulin beta-2 chain OS=Lupinus albus GN=TUBB2 PE=... [more]
TBB2_SOYBN3.226e-7280.63Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB_PHYCI4.213e-7278.75Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB7_ARATH5.502e-7281.25Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB_STYLE7.186e-7278.75Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB_NAEGR7.186e-7279.38Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB1_CYAPA7.186e-7278.13Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionC05015A02SK FlavSen1 Citrus clementina cDNA clone C05015A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294309 ID=CX294309; Name=CX294309; organism=Citrus clementina; type=EST; length=558bp
TCAGATCACATCCTCTCTCTCTCTCTCTCTCTAAATCTTCAATTCATTTT
CTCTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTC
AAGGAGGCCAATGCGGCAACCAAATCGGCTCCAAATTCTGGGAAGTCATT
TGCGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACGGCGT
TGAGGATCTTCAACTGGAGCGAATCAATGTCTATTACAACGAAGCTTCCG
GTGGAAGGTACGTGCCTCGAGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGATAGTATCAGATCCGGCCCGTACGGCCAGATCTTTCGACCTGATAA
CTTCGTTTTTGGACAATCCGGTGCGGGCAATAACTGGGCCAAAGGTCATT
ATACTGAAGGCGCCGAATTGATCGACGCTGTTCTTGACGTCGTTCGTAAG
GAGGCAGAGAACTGTGATTGCTTGCAAGGCTTTCAGGTGTGCCACTCACT
GGGAGGAGGTACAGGTTCTGGCATGGGAACTCTCTTGATATCAAAGATTA
GAGAGGAT
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