CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_PORPU (ATP synthase subunit c, chloroplastic OS=Porphyra purpurea GN=atpH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.253e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ ++SAASVIAAGLAVGLA+I                IARQPE EGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSIVSAASVIAAGLAVGLAAIGPGIGQGSAAANAVEGIARQPEVEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.9422 bits (45), Expect = 3.253e-14
Identity = 12/21 (57.14%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  493 FYGSFNIYGLVVALH-FFCDP 552
            F  S  IYGLVVAL   F +P
Sbjct:   59 FMESLTIYGLVVALSLLFANP 79          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_THEEB (ATP synthase subunit c OS=Thermosynechococcus elongatus (strain BP-1) GN=atpE PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.674e-14
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI++ASV+AA LA+GLAS+                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MNPLIASASVLAAALAIGLASLGPGLAQGNASGQALEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNSC (ATP synthase subunit c OS=Synechococcus sp. (strain CC9605) GN=atpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.496e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ + SAASV+AAGLAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSITSAASVVAAGLAVGLAAIGPGIGQGTASGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.557 bits (44), Expect = 5.496e-14
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  S  IYGLVVAL
Sbjct:   59 FMESLTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNS9 (ATP synthase subunit c OS=Synechococcus sp. (strain CC9902) GN=atpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.496e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ + SAASV+AAGLAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSITSAASVVAAGLAVGLAAIGPGIGQGTASGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.557 bits (44), Expect = 5.496e-14
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  S  IYGLVVAL
Sbjct:   59 FMESLTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNS3 (ATP synthase subunit c OS=Synechococcus sp. (strain CC9311) GN=atpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.496e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ + SAASV+AAGLAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSITSAASVVAAGLAVGLAAIGPGIGQGSASQGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.557 bits (44), Expect = 5.496e-14
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  S  IYGLVVAL
Sbjct:   59 FMESLTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNR3 (ATP synthase subunit c OS=Synechococcus sp. (strain RCC307) GN=atpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.496e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ + SAASV+AAGLAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSITSAASVVAAGLAVGLAAIGPGIGQGTASGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.557 bits (44), Expect = 5.496e-14
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  S  IYGLVVAL
Sbjct:   59 FMESLTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNPX (ATP synthase subunit c OS=Synechococcus sp. (strain WH8102) GN=atpE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.496e-14
Identity = 42/67 (62.69%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ + SAASV+AAGLAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MDSITSAASVVAAGLAVGLAAIGPGIGQGTASGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          

HSP 2 Score: 21.557 bits (44), Expect = 5.496e-14
Identity = 10/14 (71.43%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  S  IYGLVVAL
Sbjct:   59 FMESLTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_CYAP8 (ATP synthase subunit c OS=Cyanothece sp. (strain PCC 8801) GN=atpE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.104e-14
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP ++AASVIAA LAVGLA+I                IARQPEAEGKIRGTLLLSLAFME+LT  G
Sbjct:    1 MNPTVAAASVIAAALAVGLAAIGPGFGQGNASGEAVSGIARQPEAEGKIRGTLLLSLAFMESLTIYG 67          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_THAPS (ATP synthase subunit c, chloroplastic OS=Thalassiosira pseudonana GN=atpH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.143e-14
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+ +ISAASVIAAGLA+GLA+I                IARQPEAE KIRGTLLLSLAFMEALT  G
Sbjct:    1 MDSIISAASVIAAGLAIGLAAIGPGIGQGNAAGQAVEGIARQPEAENKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 7.143e-14
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_TRIEI (ATP synthase subunit c OS=Trichodesmium erythraeum (strain IMS101) GN=atpE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.972e-14
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+PLI+AASV+AA LAVGL +I                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MDPLIAAASVVAAALAVGLGAIGPGIGQGNAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_PORPU3.253e-1462.69ATP synthase subunit c, chloroplastic OS=Porphyra ... [more]
ATPL_THEEB4.674e-1462.69ATP synthase subunit c OS=Thermosynechococcus elon... [more]
ATPL_SYNSC5.496e-1462.69ATP synthase subunit c OS=Synechococcus sp. (strai... [more]
ATPL_SYNS95.496e-1462.69ATP synthase subunit c OS=Synechococcus sp. (strai... [more]
ATPL_SYNS35.496e-1462.69ATP synthase subunit c OS=Synechococcus sp. (strai... [more]
ATPL_SYNR35.496e-1462.69ATP synthase subunit c OS=Synechococcus sp. (strai... [more]
ATPL_SYNPX5.496e-1462.69ATP synthase subunit c OS=Synechococcus sp. (strai... [more]
ATPL_CYAP86.104e-1464.18ATP synthase subunit c OS=Cyanothece sp. (strain P... [more]
ATPH_THAPS7.143e-1464.18ATP synthase subunit c, chloroplastic OS=Thalassio... [more]
ATPL_TRIEI7.972e-1464.18ATP synthase subunit c OS=Trichodesmium erythraeum... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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