CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNY3 (ATP synthase subunit c OS=Synechocystis sp. (strain PCC 6803) GN=atpE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.273e-11
Identity = 39/67 (58.21%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+  ++AASVIAA LAVGL +I                IARQPEAEGKIRGTLLL+LAFME+LT  G
Sbjct:    1 MDSTVAAASVIAAALAVGLGAIGPGIGQGNASGQAVSGIARQPEAEGKIRGTLLLTLAFMESLTIYG 67          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJB (ATP synthase subunit c OS=Synechococcus sp. GN=atpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.344e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALT  G
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.344e-11
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPL_SYNJA (ATP synthase subunit c OS=Synechococcus sp. (strain JA-3-3Ab) GN=atpE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.344e-11
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+PL SAASV++A LA+GL S+                +ARQPEAE KIRG LL+SLAFMEALT  G
Sbjct:    1 MDPLTSAASVLSAALAIGLGSLGPGLGQGNAAAAAMEGLARQPEAEDKIRGNLLVSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.344e-11
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPL_SYNY31.273e-1158.21ATP synthase subunit c OS=Synechocystis sp. (strai... [more]
ATPL_SYNJB1.344e-1155.22ATP synthase subunit c OS=Synechococcus sp. GN=atp... [more]
ATPL_SYNJA1.344e-1155.22ATP synthase subunit c OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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