CX294315 | Citrus Genome Database

Overview


Name	CX294315
Unique Name	CX294315
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	601

Libraries


Library Name	Type
FlavSen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_LIRTU (ATP synthase subunit c, chloroplastic OS=Liriodendron tulipifera GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_LEPVR (ATP synthase subunit c, chloroplastic OS=Lepidium virginicum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_LEMMI (ATP synthase subunit c, chloroplastic OS=Lemna minor GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_LACSA (ATP synthase subunit c, chloroplastic OS=Lactuca sativa GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_JASNU (ATP synthase subunit c, chloroplastic OS=Jasminum nudiflorum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ILLOL (ATP synthase subunit c, chloroplastic OS=Illicium oligandrum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_HUPLU (ATP synthase subunit c, chloroplastic OS=Huperzia lucidula GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_HELAN (ATP synthase subunit c, chloroplastic OS=Helianthus annuus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_GUIAB (ATP synthase subunit c, chloroplastic OS=Guizotia abyssinica GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_GOSHI (ATP synthase subunit c, chloroplastic OS=Gossypium hirsutum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

The following BLAST results are available for this feature:

BLAST of CX294315 vs. ExPASy Swiss-Prot

BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_LIRTU	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Liriodend...	[more]
ATPH_LEPVR	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Lepidium ...	[more]
ATPH_LEMMI	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Lemna min...	[more]
ATPH_LACSA	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Lactuca s...	[more]
ATPH_JASNU	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Jasminum ...	[more]
ATPH_ILLOL	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Illicium ...	[more]
ATPH_HUPLU	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Huperzia ...	[more]
ATPH_HELAN	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Helianthu...	[more]
ATPH_GUIAB	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Guizotia ...	[more]
ATPH_GOSHI	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Gossypium...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T