CX294315 | Citrus Genome Database

Overview


Name	CX294315
Unique Name	CX294315
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	601

Libraries


Library Name	Type
FlavSen1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_FAGEA (ATP synthase subunit c, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_EUCGG (ATP synthase subunit c, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_DRIGR (ATP synthase subunit c, chloroplastic OS=Drimys granadensis GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_DIOEL (ATP synthase subunit c, chloroplastic OS=Dioscorea elephantipes GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_DAUCA (ATP synthase subunit c, chloroplastic OS=Daucus carota GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CUSRE (ATP synthase subunit C, plastid OS=Cuscuta reflexa GN=atpE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CUSEX (ATP synthase subunit C, plastid OS=Cuscuta exaltata GN=atpE PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CUCSA (ATP synthase subunit c, chloroplastic OS=Cucumis sativus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_COFAR (ATP synthase subunit c, chloroplastic OS=Coffea arabica GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CITSI (ATP synthase subunit c, chloroplastic OS=Citrus sinensis GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2

Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1

Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72

The following BLAST results are available for this feature:

BLAST of CX294315 vs. ExPASy Swiss-Prot

BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173


Match Name	E-value	Identity	Description
ATPH_FAGEA	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Fagopyrum...	[more]
ATPH_EUCGG	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Eucalyptu...	[more]
ATPH_DRIGR	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Drimys gr...	[more]
ATPH_DIOEL	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Dioscorea...	[more]
ATPH_DAUCA	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Daucus ca...	[more]
ATPH_CUSRE	1.011e-16	73.13	ATP synthase subunit C, plastid OS=Cuscuta reflexa...	[more]
ATPH_CUSEX	1.011e-16	73.13	ATP synthase subunit C, plastid OS=Cuscuta exaltat...	[more]
ATPH_CUCSA	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Cucumis s...	[more]
ATPH_COFAR	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Coffea ar...	[more]
ATPH_CITSI	1.011e-16	73.13	ATP synthase subunit c, chloroplastic OS=Citrus si...	[more]

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Properties


Property Name	Value
Genbank description	C05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T