CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ADICA (ATP synthase subunit c, chloroplastic OS=Adiantum capillus-veneris GN=atpH PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ACOCL (ATP synthase subunit c, chloroplastic OS=Acorus calamus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ACOAM (ATP synthase subunit c, chloroplastic OS=Acorus americanus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_OLIPU (ATP synthase subunit c, chloroplastic OS=Olimarabidopsis pumila GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_DRANE (ATP synthase subunit c, chloroplastic OS=Draba nemorosa GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CRUWA (ATP synthase subunit c, chloroplastic OS=Crucihimalaya wallichii GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CAPBU (ATP synthase subunit c, chloroplastic OS=Capsella bursa-pastoris GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ARATH (ATP synthase subunit c, chloroplastic OS=Arabidopsis thaliana GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ARAHI (ATP synthase subunit c, chloroplastic OS=Arabis hirsuta GN=atpH PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.315e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+SAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.315e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_WELMI (ATP synthase subunit c, chloroplastic OS=Welwitschia mirabilis GN=atpH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.710e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_ADICA1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Adiantum ... [more]
ATPH_ACOCL1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Acorus ca... [more]
ATPH_ACOAM1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Acorus am... [more]
ATPH_OLIPU1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Olimarabi... [more]
ATPH_DRANE1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Draba nem... [more]
ATPH_CRUWA1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Crucihima... [more]
ATPH_CAPBU1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Capsella ... [more]
ATPH_ARATH1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Arabidops... [more]
ATPH_ARAHI1.315e-1671.64ATP synthase subunit c, chloroplastic OS=Arabis hi... [more]
ATPH_WELMI1.710e-1671.64ATP synthase subunit c, chloroplastic OS=Welwitsch... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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