CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SOYBN (ATP synthase subunit c, chloroplastic OS=Glycine max GN=atpH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.710e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_PHAVU (ATP synthase subunit c, chloroplastic OS=Phaseolus vulgaris GN=atpH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.710e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_LOTJA (ATP synthase subunit c, chloroplastic OS=Lotus japonicus GN=atpH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.710e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_GNEPA (ATP synthase subunit c, chloroplastic OS=Gnetum parvifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 1.710e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_WHEAT (ATP synthase subunit c, chloroplastic OS=Triticum aestivum GN=atpH PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_STAPU (ATP synthase subunit c, chloroplastic OS=Staurastrum punctulatum GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPVISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SPIOL (ATP synthase subunit c, chloroplastic OS=Spinacia oleracea GN=atpH PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SORBI (ATP synthase subunit c, chloroplastic OS=Sorghum bicolor GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SOLBU (ATP synthase subunit c, chloroplastic OS=Solanum bulbocastanum GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SACOF (ATP synthase subunit c, chloroplastic OS=Saccharum officinarum GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_SOYBN1.710e-1671.64ATP synthase subunit c, chloroplastic OS=Glycine m... [more]
ATPH_PHAVU1.710e-1671.64ATP synthase subunit c, chloroplastic OS=Phaseolus... [more]
ATPH_LOTJA1.710e-1671.64ATP synthase subunit c, chloroplastic OS=Lotus jap... [more]
ATPH_GNEPA1.710e-1671.64ATP synthase subunit c, chloroplastic OS=Gnetum pa... [more]
ATPH_WHEAT2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Triticum ... [more]
ATPH_STAPU2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Staurastr... [more]
ATPH_SPIOL2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Spinacia ... [more]
ATPH_SORBI2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Sorghum b... [more]
ATPH_SOLBU2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Solanum b... [more]
ATPH_SACOF2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Saccharum... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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