CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CERDE (ATP synthase subunit c, chloroplastic OS=Ceratophyllum demersum GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLIS+ASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISSASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_BRADI (ATP synthase subunit c, chloroplastic OS=Brachypodium distachyon GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_AGRST (ATP synthase subunit c, chloroplastic OS=Agrostis stolonifera GN=atpH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_GOSBA (ATP synthase subunit c, chloroplastic OS=Gossypium barbadense GN=atpH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.224e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEAL+  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALSIYG 67

HSP 2 Score: 20.7866 bits (42), Expect = 2.224e-16
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  + +IYGLVVAL
Sbjct:   59 FMEALSIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_IPOPU (ATP synthase subunit c, chloroplastic OS=Ipomoea purpurea GN=atpH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.760e-16
Identity = 48/67 (71.64%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+PLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 3.760e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CYCTA (ATP synthase subunit c, chloroplastic OS=Cycas taitungensis GN=atpH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.760e-16
Identity = 48/67 (71.64%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLI AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLIPAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 3.760e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CUSOB (ATP synthase subunit C, plastid OS=Cuscuta obtusiflora GN=atpE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.889e-16
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 4.889e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CUSGR (ATP synthase subunit C, plastid OS=Cuscuta gronovii GN=atpE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.889e-16
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNP+ISAASVIAAG AVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPIISAASVIAAGFAVGLASIGPGIGQGTAAGRAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 4.889e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_CHLAT (ATP synthase subunit c, chloroplastic OS=Chlorokybus atmophyticus GN=atpH PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.356e-16
Identity = 47/67 (70.15%), Postives = 49/67 (73.13%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            M+PLISAASV+AAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MSPLISAASVLAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 6.356e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
[Close]
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_ATRBE (ATP synthase subunit c, chloroplastic OS=Atropa belladonna GN=atpH PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.356e-16
Identity = 47/67 (70.15%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPL+ AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLVFAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67

HSP 2 Score: 20.4014 bits (41), Expect = 6.356e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1 
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_CERDE2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Ceratophy... [more]
ATPH_BRADI2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Brachypod... [more]
ATPH_AGRST2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Agrostis ... [more]
ATPH_GOSBA2.224e-1671.64ATP synthase subunit c, chloroplastic OS=Gossypium... [more]
ATPH_IPOPU3.760e-1671.64ATP synthase subunit c, chloroplastic OS=Ipomoea p... [more]
ATPH_CYCTA3.760e-1671.64ATP synthase subunit c, chloroplastic OS=Cycas tai... [more]
ATPH_CUSOB4.889e-1670.15ATP synthase subunit C, plastid OS=Cuscuta obtusif... [more]
ATPH_CUSGR4.889e-1670.15ATP synthase subunit C, plastid OS=Cuscuta gronovi... [more]
ATPH_CHLAT6.356e-1670.15ATP synthase subunit c, chloroplastic OS=Chlorokyb... [more]
ATPH_ATRBE6.356e-1670.15ATP synthase subunit c, chloroplastic OS=Atropa be... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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