CX294316

Overview
NameCX294316
Unique NameCX294316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:21..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.421e-17
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 2
Query:  191 EQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +++ +    ++ EEVA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+   G DA+  FEDVGH
Sbjct:   14 QEVETSVTYYRLEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGH 79          

HSP 2 Score: 30.0314 bits (66), Expect = 7.421e-17
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3
Query:  387 TDSAREMMDKYYIGDIDPS 443
            +  AREM+ +YYIGDI PS
Sbjct:   80 SSDAREMLKQYYIGDIHPS 98          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.648e-17
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  203 SDPKI--HQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            SDP +  ++ EEVA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+   G DAT  FEDVGH
Sbjct:   16 SDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGH 79          

HSP 2 Score: 28.8758 bits (63), Expect = 9.648e-17
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 3
Query:  396 AREMMDKYYIGDIDPSTVPRK 458
            AREM+ +YYIGD+ P+ +  K
Sbjct:   83 AREMLKQYYIGDVHPNDLKPK 103          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.037e-15
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  209 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            PK++ ++EVA HN  ++ W+II  KVYDVS F D+HPGGDE+++   G+DAT  F D+GH
Sbjct:    2 PKVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGH 61          

HSP 2 Score: 21.557 bits (44), Expect = 1.037e-15
Identity = 11/39 (28.21%), Postives = 20/39 (51.28%), Query Frame = 3
Query:  387 TDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDK 503
            +D A  ++   YIGD+D ++   +R  +     + NQ K
Sbjct:   62 SDEALRLLKGLYIGDVDKTS---ERVSVEKVSTSENQSK 97          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.336e-15
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  230 EVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            EVA HN  KD WL+I   +YDV++F+++HPGG+EVLI   GKDAT +FEDVGH
Sbjct:   13 EVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGH 65          

HSP 2 Score: 22.3274 bits (46), Expect = 1.336e-15
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  387 TDSAREMMDKYYIGDI 434
            ++ AR+MM KY IG++
Sbjct:   66 SNDARDMMKKYKIGEL 81          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.428e-15
Identity = 29/59 (49.15%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  212 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            K  + EE+  HN +KD +++I+GKVYDVS+F DDHPGG ++++   G+DAT  ++D+GH
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGH 62          

HSP 2 Score: 24.6386 bits (52), Expect = 8.428e-15
Identity = 9/21 (42.86%), Postives = 15/21 (71.43%), Query Frame = 3
Query:  393 SAREMMDKYYIGDIDPSTVPR 455
            +A E++++ YIGD+ P T  R
Sbjct:   65 AADELLEEMYIGDLKPGTEER 85          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_ALOSE (Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=CYB5A PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.503e-14
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  212 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT DFEDVGH
Sbjct:    6 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATEDFEDVGH 64          

HSP 2 Score: 21.557 bits (44), Expect = 2.503e-14
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  396 AREMMDKYYIGDIDPSTVPR 455
            ARE+   Y IG++ P   P+
Sbjct:   68 ARELSKTYIIGELHPDDRPK 87          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.032e-14
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  188 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    2 AEQSDEAVKYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          

HSP 2 Score: 21.1718 bits (43), Expect = 4.032e-14
Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 3
Query:  396 AREMMDKYYIGDIDPSTVPR 455
            AREM   + IG++ P   P+
Sbjct:   72 AREMSKTFIIGELHPDDRPK 91          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 5.419e-14
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  188 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F++DHPGG+EVL    G DAT +FED+GH
Sbjct:    2 AEQSDKAVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGH 68          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 7.078e-14
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  194 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            Q   D K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    4 QSDKDVKYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_PIG (Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 9.244e-14
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  188 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +EQ     K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    2 AEQSDKAVKYYTLEEIQKHNNSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          
The following BLAST results are available for this feature:
BLAST of CX294316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CYB5B_HUMAN7.421e-1746.97Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5B_RAT9.648e-1750.00Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5_YEAST1.037e-1553.33Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_DROME1.336e-1562.26Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]
CYB51_SCHPO8.428e-1549.15Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
CYB5_ALOSE2.503e-1454.24Cytochrome b5 (Fragment) OS=Alouatta seniculus GN=... [more]
CYB5_HUMAN4.032e-1449.25Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5_HORSE5.419e-1449.25Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]
CYB5_RABIT7.078e-1450.77Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_PIG9.244e-1449.25Cytochrome b5 OS=Sus scrofa GN=CYB5A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC05015A12SK FlavSen1 Citrus clementina cDNA clone C05015A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294316 ID=CX294316; Name=CX294316; organism=Citrus clementina; type=EST; length=508bp
ATTCCTCACTTTGTTTGATTTCAAAATCTACTTCTTTAGAGTTTAAACAT
AAAAGGGTTTCTTTATTTGCTGTTGTTTTGATCAAAAAGTTCCCTTTTTG
GTTGGTGTTTGGGTCGATTCTACATTTTTACTTTATTTTTTTGTGGGGTT
TTTTTGAATTTGTTGAGGTTTTGTGTTTAGCTGCAGTAGTGAACAAATGG
CCTCAGATCCAAAGATTCACCAGTTCGAAGAGGTCGCCACGCACAACAAA
ACTAAGGATTGCTGGCTTATTATTTCTGGCAAGGTGTATGATGTGTCCTC
GTTCATGGATGATCACCCTGGAGGAGATGAGGTTTTGATTTCTGCAACTG
GGAAAGATGCAACAAATGACTTTGAAGATGTGGGTCACTGACTCCGCTAG
GGAGATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTTC
CTCGGAAACGTGCATATATTCCACTGGAGCAACCTGCTTACAATCAAGAC
AAGACCCC
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