CX294316

Overview
NameCX294316
Unique NameCX294316
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:21..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_BOVIN (Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.207e-13
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  188 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +E+ +   K +  EE+  HN +K  WLI+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    2 AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.577e-13
Identity = 32/67 (47.76%), Postives = 45/67 (67.16%), Query Frame = 2
Query:  188 SEQMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +EQ   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    2 AEQSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.059e-13
Identity = 29/58 (50.00%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  215 IHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            I+  EEVA H    D W+I++GKVY++S+++D+HPGG+EV++   G DAT  F+D+GH
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGH 67          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 3.513e-13
Identity = 29/55 (52.73%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  224 FEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            +++VA HN  KD +++I  KVYD++ F+D+HPGG+EVL+   G+D+T  FEDVGH
Sbjct:    7 YQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGH 61          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 2
Query:  212 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            KI   +EV+ H    D W++I  KVYD++ F+ +HPGG+EVL+   GKDAT  FED+GH
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGH 62          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_CHICK (Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 5.992e-13
Identity = 28/59 (47.46%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  212 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            + ++ EEV  HN ++  W+I+  ++YD++ F+D+HPGG+EVL    G DAT +FEDVGH
Sbjct:   15 RYYRLEEVQKHNNSQSTWIIVHHRIYDITKFLDEHPGGEEVLREQAGGDATENFEDVGH 73          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.749e-13
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  209 PKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDV 382
            P+ +  EEVA HN  + CW +  GKVYD + ++D+HPGG E ++   G DAT++F  +
Sbjct:  497 PRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI 554          

HSP 2 Score: 26.1794 bits (56), Expect = 6.749e-13
Identity = 12/33 (36.36%), Postives = 18/33 (54.55%), Query Frame = 3
Query:  387 TDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQP 485
            +  A+ M+ +YYIGD+  S      A +P  QP
Sbjct:  556 SSKAKAMLAQYYIGDLVASKPAAAGATVPEPQP 588          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 7.825e-13
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2
Query:  194 QMASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            Q   D K +  EE+  H  +K  W+I+  KVYD++ F+++HPGG+EVL    G DAT +FEDVGH
Sbjct:    4 QSDKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGH 68          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.743e-12
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  227 EEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            EEV  HN   D ++++  KVYD+S F+D HPGG+EVL+   G+DA+  FEDVGH
Sbjct:    9 EEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGH 62          
BLAST of CX294316 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.884e-12
Identity = 33/63 (52.38%), Postives = 41/63 (65.08%), Query Frame = 2
Query:  200 ASDPKIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGH 388
            + D K     EVA +N     W II   VYDV++F+++HPGG+EVLI   GKDAT  FEDVGH
Sbjct:    3 SEDVKYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGH 65          
The following BLAST results are available for this feature:
BLAST of CX294316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CYB5_BOVIN1.207e-1347.76Cytochrome b5 OS=Bos taurus GN=CYB5A PE=1 SV=3[more]
CYB5_RAT1.577e-1347.76Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_CANTR2.059e-1350.00Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5_NEUCR3.513e-1352.73Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_RHIST5.992e-1350.85Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_CHICK5.992e-1347.46Cytochrome b5 OS=Gallus gallus GN=CYB5A PE=1 SV=4[more]
NIA_VOLCA6.749e-1343.10Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_MOUSE7.825e-1347.69Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB52_SCHPO1.743e-1253.70Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_MUSDO3.884e-1252.38Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC05015A12SK FlavSen1 Citrus clementina cDNA clone C05015A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294316 ID=CX294316; Name=CX294316; organism=Citrus clementina; type=EST; length=508bp
ATTCCTCACTTTGTTTGATTTCAAAATCTACTTCTTTAGAGTTTAAACAT
AAAAGGGTTTCTTTATTTGCTGTTGTTTTGATCAAAAAGTTCCCTTTTTG
GTTGGTGTTTGGGTCGATTCTACATTTTTACTTTATTTTTTTGTGGGGTT
TTTTTGAATTTGTTGAGGTTTTGTGTTTAGCTGCAGTAGTGAACAAATGG
CCTCAGATCCAAAGATTCACCAGTTCGAAGAGGTCGCCACGCACAACAAA
ACTAAGGATTGCTGGCTTATTATTTCTGGCAAGGTGTATGATGTGTCCTC
GTTCATGGATGATCACCCTGGAGGAGATGAGGTTTTGATTTCTGCAACTG
GGAAAGATGCAACAAATGACTTTGAAGATGTGGGTCACTGACTCCGCTAG
GGAGATGATGGACAAGTACTATATTGGTGACATTGATCCCTCAACTGTTC
CTCGGAAACGTGCATATATTCCACTGGAGCAACCTGCTTACAATCAAGAC
AAGACCCC
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