CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_PONAB (60S ribosomal protein L23 OS=Pongo abelii GN=RPL23 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 7.220e-56
Identity = 107/139 (76.98%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGS+G KFR+SLGLPV A +NCAD+TGAKNLYIISVKGIKG+LNRLP+A VGDMVMATV          V PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_AEDAE (60S ribosomal protein L23 OS=Aedes aegypti GN=RpL23-A PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.231e-55
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGSAG KFR+SLGLPV A +NCAD+TGAKNLY+I+V GI+GRLNRLP+A VGDM +ATV          VMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGSAGGKFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_CANFA (60S ribosomal protein L23 OS=Canis familiaris GN=RPL23 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.608e-55
Identity = 108/139 (77.70%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGGS+G KFR+SLGLPV A +NCAD+TGAKNLYIISVKGIKGRLNRLP+A VGDMVMATV     X    V PAV++RQRK +RRKDGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWP IAS A +I
Sbjct:    1 MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXLRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXIASNAGSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_DROME (60S ribosomal protein L23 OS=Drosophila melanogaster GN=RpL23 PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.680e-55
Identity = 103/139 (74.10%), Postives = 120/139 (86.33%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG+AG KFR+SLGLPV A +NCAD+TGAKNLY+I+V GI+GRLNRLP+A VGDM +ATV          VMPAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A++I
Sbjct:    1 MSKRGRGGTAGGKFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNASSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_SCHPO (60S ribosomal protein L23 OS=Schizosaccharomyces pombe GN=rpl23a PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.409e-51
Identity = 95/137 (69.34%), Postives = 112/137 (81.75%), Query Frame = 1
Query:   22 RGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            RGRG ++G K+RM+LGLPV A +NCAD++GAKNLYI+SV G   RLNRLP+A  GDMV+ATV          +MPA++VRQRK WRRKDGV++YFEDNAGVIVNPKGEMKGSAITGP+ KECADLWPRIAS A  +V
Sbjct:    3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRIASNAGTVV 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_CAEEL (60S ribosomal protein L23 OS=Caenorhabditis elegans GN=rpl-23 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.035e-50
Identity = 96/139 (69.06%), Postives = 114/139 (82.01%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++ISV GI+GRLNRLPSA VGDM + +V          V+  V++RQRK +RRKDG F+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIA+ A +I
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIAANAGSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 7.731e-50
Identity = 92/133 (69.17%), Postives = 109/133 (81.95%), Query Frame = 1
Query:   34 GSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G+ G KFR+SLGLPV A +NCAD++GA+NLYII+VKG   RLNRLP+A +GDMVMATV          VMPA++VRQ K WRR+DGVF+YFEDNAGVI NPKGEMKGSAITGP+GKECADLWPR+AS +  +V
Sbjct:    5 GAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_BRUMA (60S ribosomal protein L23 OS=Brugia malayi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 7.731e-50
Identity = 98/139 (70.50%), Postives = 114/139 (82.01%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGRLNRLPSA VGDM +A+V          V+ AV+VRQRK +RR DG  +YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPRIAS A +I
Sbjct:    1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVSGIKGRLNRLPSAGVGDMFVASVKKGKPELRKKVLQAVVVRQRKQYRRIDGSSIYFEDNAGVIVNNKGEMKGSAITGPVTKECADLWPRIASNAGSI 139          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_DICDI (60S ribosomal protein L23 OS=Dictyostelium discoideum GN=rpl23 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.367e-43
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 1
Query:   37 SAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            + G+ +R+SLGLPV A +N AD++GAKNLY+I+VKGIKGRLNRLPSA VGDMVMATV          V   ++VRQRK W+RKDGV++YFEDNAGV+ NPKGE+KG+ I GP+ KEC+DLWP++A+ A  IV
Sbjct:    6 AVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGN-ILGPVAKECSDLWPKVATNAGTIV 136          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.415e-35
Identity = 80/132 (60.61%), Postives = 96/132 (72.73%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKG-EMKGSAITGPIGKECA-DLWPRIASAANAIV 432
            G +FR+SL LPV A VNCAD+TGAKNLYIISVKG  GRLNRLP+A +GD+VMA+V          V+ AVI+RQRK WRRKDG  +YFEDNAGVIVN +G + + S I GP+ KE      P+I+S A AIV
Sbjct:   10 GCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHAPAIV 141          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL23_PONAB7.220e-5676.9860S ribosomal protein L23 OS=Pongo abelii GN=RPL23... [more]
RL23_AEDAE1.231e-5574.8260S ribosomal protein L23 OS=Aedes aegypti GN=RpL2... [more]
RL23_CANFA1.608e-5577.7060S ribosomal protein L23 OS=Canis familiaris GN=R... [more]
RL23_DROME4.680e-5574.1060S ribosomal protein L23 OS=Drosophila melanogast... [more]
RL23_SCHPO1.409e-5169.3460S ribosomal protein L23 OS=Schizosaccharomyces p... [more]
RL23_CAEEL2.035e-5069.0660S ribosomal protein L23 OS=Caenorhabditis elegan... [more]
RL23_YEAST7.731e-5069.1760S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_BRUMA7.731e-5070.5060S ribosomal protein L23 OS=Brugia malayi GN=RPL2... [more]
RL23_DICDI5.367e-4362.8860S ribosomal protein L23 OS=Dictyostelium discoid... [more]
RL23_TRYCR2.415e-3560.6160S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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