CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_FUSNN (50S ribosomal protein L14 OS=Fusobacterium nucleatum subsp. nucleatum GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 384
            +N AD++GAK L +I V G  G   R     +GD+V+A+V             ++ AVIVR RK  RR DG ++ F+DNAGV++N   E + + I GP+ +E
Sbjct:    8 LNVADNSGAKKLMVIRVLG--GSRKRFGK--IGDIVVASVKEAIPGGNVKKGDIVKAVIVRTRKETRRDDGSYIKFDDNAGVVINNNNEPRATRIFGPVARE 105          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            +N AD++GAK L  I V G  G   R  S  VGD+++ATV             V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_BRAHW (50S ribosomal protein L14 OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 432
            + V +T+N AD+TG K L  I V G     +R   A +GD+++ +V             V+ AVIVR +K  RR DG ++ F++NA VIV+ K E +G  I GP+ +E  D  + +I S A  ++
Sbjct:    2 IQVPSTLNVADNTGVKKLKCIKVLGG----SRRRYATLGDVIICSVTDIIPTCSIEKGKVVKAVIVRVKKEVRRPDGSYIRFDENAAVIVDDKKEPRGKRIFGPVARELRDRGFMKIVSLAPEVI 122          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_FUSNN9.239e-1139.2250S ribosomal protein L14 OS=Fusobacterium nucleat... [more]
RL14_CYAP49.239e-1140.9550S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_BRAHW9.239e-1136.0050S ribosomal protein L14 OS=Brachyspira hyodysent... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
back to top