CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:6..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.420e-27
Identity = 59/126 (46.83%), Postives = 84/126 (66.67%), Query Frame = 1
Query:   55 RMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            R + GLP+ A + C D+TGAK + +I VK +     R+P+A VGDM +A+V          V+ AV+VRQR+P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ ++ IV
Sbjct:    7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METJA (50S ribosomal protein L14P OS=Methanocaldococcus jannaschii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.676e-26
Identity = 63/121 (52.07%), Postives = 76/121 (62.81%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            LPV A   CAD+TGAK + II+V+  KG   RLP+A VGDMV+ TV          V+PAV++RQRK  RR DG  + F DNA VIV P G  KGS I GP+ KE A+ WP IA  A  I+
Sbjct:   12 LPVGARCICADNTGAKEVEIIAVRNYKGVARRLPTARVGDMVIVTVKKGTPEMRKQVLPAVVIRQRKEIRRPDGTRVKFADNAVVIVTPDGNPKGSDIKGPVAKEAAERWPGIARIAKIII 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_KORCO (50S ribosomal protein L14P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.961e-26
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G K +++ GLPV A + CAD+TGAK L II V G KGR +R+P+A VGDMV   V             A++VRQR P+RRK+G ++ FEDNA V+VN  G  +GS   GPI KE  + WP ++  +  +V
Sbjct:   12 GVKPKITHGLPVRARLKCADNTGAKLLMIIGVHGYKGRKDRVPTASVGDMVTVVVKRGKYDLMHKPFKAIVVRQRMPYRRKNGQWVVFEDNAAVLVNDDGTPRGSEFRGPIAKEAIERWPSLSVISAQVV 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CENSY (50S ribosomal protein L14P OS=Cenarchaeum symbiosum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.017e-25
Identity = 65/140 (46.43%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   22 RGRGGSAG-NKFR--MSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            R RG + G  +FR  ++  LPV A V CAD++GAK L II V+  K R++RLP+A VGD V   V          V  AVI+RQ+ P RR +GV + FEDNA V+  P+GEMKG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:    5 RSRGKAKGVEEFRPYVTRALPVGARVTCADNSGAKVLEIIMVQKAKTRVSRLPAAAVGDYVNVVVKKGPAELRKQVHGAVIIRQKYPVRRLNGVRVAFEDNAAVLTTPEGEMKGTDIKGPVAAEASEKWPRLANLASMVV 144          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRFU (50S ribosomal protein L14P OS=Pyrococcus furiosus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.734e-25
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   13 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+K+G G + G +  R +  LPV A +  AD++GAK + II V    G   RL SA VGDMV+ATV          V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_SULTO (50S ribosomal protein L14P OS=Sulfolobus tokodaii GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.958e-25
Identity = 60/130 (46.15%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G++  ++ GL    TV  AD++GAK   II + G KG L R+P A + D+VM +V             AVIVRQR P+RR DG ++ FEDNA VIVNP G  KG+ I GPI KE A+ WP++AS A  ++
Sbjct:   12 GSRKGLTPGLQHYTTVTVADNSGAKEAVIIGIYGYKGVLRRIPFANIADLVMVSVRKGTPEVRKQKFKAVIVRQRMPFRRPDGTWIAFEDNAVVIVNPDGTPKGTEIRGPIAKEAAERWPKVASIATMVI 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_IGNH4 (50S ribosomal protein L14P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 61/134 (45.52%), Postives = 83/134 (61.94%), Query Frame = 1
Query:   37 SAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            ++ NK R  +  GL V + V   D++GAK   II V G  GRL R+P A VGDMV+ TV          V+ A++VRQRKP+RR DG ++ FEDNA VIV+  G  +GS I GP+ +E  + WPRI + A+ +V
Sbjct:    4 ASANKSRRKVVTGLQVGSYVKVTDNSGAKVAMIIGVPGYHGRLRRIPPAGVGDMVVVTVKKGTPEMRHQVVRAIVVRQRKPFRRPDGTWVAFEDNAVVIVSEDGTPRGSEIRGPVAREAVERWPRIGNVASIVV 137          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRHO (50S ribosomal protein L14P OS=Pyrococcus horikoshii GN=rpl14p PE=3 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 5.046e-25
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 1
Query:   13 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+K+G G + G +  R +  +P+ A +  AD++GAK + +I V    G   RL SA VGDMV+ATV          V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGISPVRPTRAIPIGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGTEIRGPVAREAAEKWVRIGSIASIIV 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRAB (50S ribosomal protein L14P OS=Pyrococcus abyssi GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.046e-25
Identity = 64/141 (45.39%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   13 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+K+G G + G    R +  +PV A +  AD++GAK + +I V    G   RL SA VGDMV+ATV          V+ AVI+RQRK +RR DG+ + FEDNA VIV P+G  +G+ I GP+ +E A+ W RI S A+ IV
Sbjct:    1 MAKKGAGATRGITPVRPTRAIPVGAYLTVADNSGAKVIQVIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRAVIIRQRKEYRRLDGMRIKFEDNAAVIVTPEGVPRGTEIRGPVAREAAERWVRIGSIASIIV 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METVS (50S ribosomal protein L14P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.046e-25
Identity = 57/120 (47.50%), Postives = 76/120 (63.33%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 429
            LP  A + CAD+TGAK L +I+VK   G + RLPSA VG +V  +V          V+PA+I+RQ+K ++R DG  + FEDNA VIV P+G  KGS I GP+ KE A+ WP ++  A  I
Sbjct:   12 LPNGARLVCADNTGAKELEVIAVKNYSGTVRRLPSAGVGQIVFVSVKKGTPEMRKQVLPAIIIRQKKEYKRADGTRVKFEDNAAVIVTPEGTPKGSDIKGPVSKEAAERWPGVSRLAKII 131          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_PICTO2.420e-2746.8350S ribosomal protein L14P OS=Picrophilus torridus... [more]
RL14_METJA2.676e-2652.0750S ribosomal protein L14P OS=Methanocaldococcus j... [more]
RL14_KORCO5.961e-2646.1550S ribosomal protein L14P OS=Korarchaeum cryptofi... [more]
RL14_CENSY1.017e-2546.4350S ribosomal protein L14P OS=Cenarchaeum symbiosu... [more]
RL14_PYRFU1.734e-2546.8150S ribosomal protein L14P OS=Pyrococcus furiosus ... [more]
RL14_SULTO2.958e-2546.1550S ribosomal protein L14P OS=Sulfolobus tokodaii ... [more]
RL14_IGNH43.864e-2545.5250S ribosomal protein L14P OS=Ignicoccus hospitali... [more]
RL14_PYRHO5.046e-2544.6850S ribosomal protein L14P OS=Pyrococcus horikoshi... [more]
RL14_PYRAB5.046e-2545.3950S ribosomal protein L14P OS=Pyrococcus abyssi GN... [more]
RL14_METVS5.046e-2547.5050S ribosomal protein L14P OS=Methanococcus vannie... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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