CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_THEPD (50S ribosomal protein L14P OS=Thermofilum pendens (strain Hrk 5) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.616e-23
Identity = 57/142 (40.14%), Postives = 89/142 (62.68%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G  +R+ L  G+ + + V  AD++GA    +I V   K    R+P A VGD+V+ ++          VM A+++RQR+P+RR DG ++ FEDNA VI+ P+GE KG+ I GP+ KE A+ WP++++ A+ IV
Sbjct:    1 MAKRGPK-TVGVSYRLGLTPGVFMESLVKVADNSGATLAKVIGVPHYKAVWRRIPGAAVGDIVIVSIRAGKPELRKQVMRAIVIRQRRPYRRPDGSWIAFEDNAVVIITPEGEPKGTEIRGPLAKEAAERWPKLSAMASIIV 141          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_NITMS (50S ribosomal protein L14P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.723e-23
Identity = 54/121 (44.63%), Postives = 77/121 (63.64%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            +PV A + CAD++GAK L +I+V   + R +RLPSA VGD     V          V  AVI+RQ+ P RR +GV + FEDNA V++ P+GE KG+ I GP+  E ++ WPR+A+ A+ +V
Sbjct:   20 IPVGANIVCADNSGAKILEVINVPRHRTRASRLPSASVGDFCNVVVKKGPAELRKQVYGAVIIRQKYPVRRLNGVRVCFEDNAAVLITPEGETKGTDIKGPVAAEASEKWPRVANLASMVV 140          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METTP (50S ribosomal protein L14P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.169e-23
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            GNK ++   +     + CAD+TGA+ L+++SVK  +G  NR P A +GDMV+ +V          +  AVI+RQ+K +RR DG+ + FEDNA VI +  G  KGS I GP+ +E A+ + +IAS+A  IV
Sbjct:    3 GNKAKIPRSINTGTYLECADNTGARTLFVVSVKKYRGVKNRQPCAGIGDMVVVSVKKGTPEMRKQIFNAVIIRQKKEFRRPDGLRVKFEDNAAVITDDAGVPKGSEIKGPVAREVAERFGKIASSAAIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_HALSA (50S ribosomal protein L14P OS=Halobacterium salinarium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.169e-23
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + + CAD+TGA+ L I SV G +GR NR P A +GD +  +V          V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_HALS3 (50S ribosomal protein L14P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.169e-23
Identity = 58/128 (45.31%), Postives = 78/128 (60.94%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + + CAD+TGA+ L I SV G +GR NR P A +GD +  +V          V+ AV+VRQRKP RR DG  + FEDNA VI++  GE +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADITQGLEKGSLITCADNTGARELKITSVMGYQGRKNRHPKAGLGDTITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIIDDLGEPRGTEIKGPISREVAERYGTIASTATMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_SULAC (50S ribosomal protein L14P OS=Sulfolobus acidocaldarius GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.057e-23
Identity = 53/117 (45.30%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   82 ATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            ++V  AD++GAK   II + G +G L R+P A + D+VM +V             AVIVRQR P+RR DG ++ FEDNA VI+NP G  KG+ + GPI +E A+ WP+IAS A  ++
Sbjct:   22 SSVVVADNSGAKEAVIIGIYGYRGVLRRVPFANIADLVMVSVRKGSPDVRKQKFKAVIVRQRMPFRRPDGTWISFEDNAVVIINPDGTPKGTEVRGPIAREAAERWPKIASVATMVI 138          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CALMQ (50S ribosomal protein L14P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.052e-22
Identity = 58/144 (40.28%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G  +R  L  G+ + + VN AD++GAK + +I V G   K    R+P   VGDMV+ +V          ++ A++VRQR+P+RR DG ++ FEDNA VIV  +G++KG+ + GP+  E A  WP++AS A  I+
Sbjct:    1 MAKRGGPRTVGVPWRFHLTPGIFMNSLVNVADNSGAKVVKVIGVVGHYSKNVHRRIPGVSVGDMVVVSVQEGKPEMRKQILRAIVVRQRRPFRRPDGTWVAFEDNAVVIVTEEGQVKGTEVHGPVAMEAAQRWPQVASIATMII 144          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METBU (50S ribosomal protein L14P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.061e-22
Identity = 54/130 (41.54%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G + ++   L   A + C D+TGA+ + IISVK  +G  NR+P   +GDM + +V          ++ AVIVRQ+K +RR DG+ + FEDNA VIV+ KG  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GIRSKIPRALNAGAKIECVDNTGARTVEIISVKKYRGVKNRMPKGGIGDMCVVSVKKGTPEMRKQILYAVIVRQKKEFRRPDGIRVAFEDNAVVIVDDKGIPKGTDIKGPVAREAAERFPKIGTTASMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRCJ (50S ribosomal protein L14P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.519e-21
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKG--IKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G   +F ++ G+ + + V  AD++GAK + +I V G   K    R+P A VGDMV+  V          +  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKSVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRAE (50S ribosomal protein L14P OS=Pyrobaculum aerophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.984e-21
Identity = 58/144 (40.28%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G   +F ++ G+ + + V  AD++GAK + +I V G   +    R+P A VGDMV+  V          +  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_THEPD3.616e-2340.1450S ribosomal protein L14P OS=Thermofilum pendens ... [more]
RL14_NITMS4.723e-2344.6350S ribosomal protein L14P OS=Nitrosopumilus marit... [more]
RL14_METTP6.169e-2342.3150S ribosomal protein L14P OS=Methanosaeta thermop... [more]
RL14_HALSA6.169e-2345.3150S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_HALS36.169e-2345.3150S ribosomal protein L14P OS=Halobacterium salina... [more]
RL14_SULAC8.057e-2345.3050S ribosomal protein L14P OS=Sulfolobus acidocald... [more]
RL14_CALMQ1.052e-2240.2850S ribosomal protein L14P OS=Caldivirga maquiling... [more]
RL14_METBU3.061e-2241.5450S ribosomal protein L14P OS=Methanococcoides bur... [more]
RL14_PYRCJ1.519e-2140.9750S ribosomal protein L14P OS=Pyrobaculum calidifo... [more]
RL14_PYRAE1.984e-2140.2850S ribosomal protein L14P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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