CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:6..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_HALMA (50S ribosomal protein L14P OS=Haloarcula marismortui GN=rpl14p PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.592e-21
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   67 GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            GL   + + CAD+TGA+ L +ISV G  G  NR P A +GD +  +V          V+ AV+VRQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A  +  +ASAA  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_HALLT (50S ribosomal protein L14P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.592e-21
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + + CAD+TGA+ L +ISV G  G  NR P A +GD V  +V          V+ AV+VRQRKP RR +G  + FEDNA VI++   E +G+ I GP+ +E A+ +  IAS A  IV
Sbjct:    5 KADVTQGLSKGSLITCADNTGARELKVISVAGYSGTKNRHPKAGIGDKVTVSVTKGTPEMRRQVLEAVVVRQRKPIRRPNGTRVKFEDNAAVIIDDLDEPRGTEIKGPVAREVAERFGSIASTATMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRIL (50S ribosomal protein L14P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.385e-21
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSL--GLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G  +R  +  G+ + + V  AD++GA+ + +I V G   +    R+P A VGDMV+  V          +  A++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ IV
Sbjct:    1 MAKRGGKRTVGVSYRFHVTPGIFLNSLVPVADNSGARLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVREGKPELRKQIFRAIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIIV 144          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_HALWD (50S ribosomal protein L14P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.385e-21
Identity = 58/128 (45.31%), Postives = 75/128 (58.59%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            K  ++ GL   + V CAD+TGA+ L +ISV G  G  NR P A +GD V  +V          V+ AVIVRQRK  RR DG  + FEDNA VI++   E +G+ I GPI +E A+ +  IAS A  IV
Sbjct:    5 KADVTKGLERGSLVTCADNTGARELKVISVMGSSGTKNRHPKAGIGDQVTVSVTKGTPEMRRQVLEAVIVRQRKSIRRPDGTRVKFEDNAAVIIDEMEEPRGTEIKGPIAREVAERFGSIASTATMIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_PYRAR (50S ribosomal protein L14P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.774e-21
Identity = 57/144 (39.58%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   13 MSKRGRGGSAG--NKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRL--NRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            M+KRG   + G   +F ++ G+ + + V  AD++GAK + +I V G   +    R+P A VGDMV+  V          +   ++VRQR+P+RR DG ++ FEDNA VIV P+G+ KGS I GP+  E    WP IA+ A+ +V
Sbjct:    1 MAKRGGKRTVGVPYRFHVTPGIFMNSLVPVADNSGAKLVRVIGVVGHYSKTVHRRIPGAGVGDMVVVVVKEGKPELRRQIFRGIVVRQRRPYRRPDGTWVAFEDNAVVIVTPEGDPKGSEIHGPVAMEATLRWPTIANLASIVV 144          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METBF (50S ribosomal protein L14P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.848e-21
Identity = 55/130 (42.31%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A V C D+TGAK + IISVK  +G  NR+P A +GDM + +V          V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GPI +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAKVPCVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLRVSFEDNAMVITDEEGIPKGTDIKGPIAREVAERYPKIGTTASIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METAC (50S ribosomal protein L14P OS=Methanosarcina acetivorans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.848e-21
Identity = 53/130 (40.77%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A + C D+TGAK + IISVK  +G  NR+P A +GDM + +V          V+ AV+VRQ++ +RR DG+ + FEDNA VI + +G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GMRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQVLLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEEGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_NATPD (50S ribosomal protein L14P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.680e-20
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query:   67 GLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            GL   + + CAD+TGA+ L + S+ G  G  NR P A +GD +  +V          V+ AV++RQRKP RR DG  + FEDNA VIV+   + +G+ + GPI +E A+ +  IAS A  IV
Sbjct:   11 GLEKGSLITCADNTGARELKVTSISGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVIRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAERFGSIASTATIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_NANEQ (50S ribosomal protein L14P OS=Nanoarchaeum equitans GN=rpl14p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.680e-20
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNA-GVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            LPV A +N AD++GAK + +I+VKG KGR  RL  A + D+V+ +V          +  AV+VR +K WRR+DG  + FEDNA  ++ +  G  KG+ I  PI KE A+ WP +A  A  IV
Sbjct:   12 LPVGAYLNVADNSGAKVVKLIAVKGYKGRKRRLAKAGIADLVIVSVRDGKPDMIGQIFKAVVVRMKKEWRRRDGTRIKFEDNAVALLKDDYGTPKGTIIKTPIAKEVAERWPDLAKIARIIV 133          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METMA (50S ribosomal protein L14P OS=Methanosarcina mazei GN=rpl14p PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.865e-20
Identity = 52/130 (40.00%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   43 GNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            G +  +   L   A + C D+TGAK + IISVK  +G  NR+P A +GDM + +V          ++ AV+VRQ++ +RR DG+ + FEDNA VI +  G  KG+ I GP+ +E A+ +P+I + A+ IV
Sbjct:    3 GIRSNIPRALNAGAQIACVDNTGAKVVEIISVKKYRGVKNRMPCAGIGDMCVVSVKKGTPEMRKQILLAVVVRQKQEFRRPDGLHVSFEDNAMVITDEDGIPKGTDIKGPVAREVAERFPKIGTTASIIV 132          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_HALMA2.592e-2144.2650S ribosomal protein L14P OS=Haloarcula marismort... [more]
RL14_HALLT2.592e-2142.9750S ribosomal protein L14P OS=Halorubrum lacusprof... [more]
RL14_PYRIL3.385e-2140.2850S ribosomal protein L14P OS=Pyrobaculum islandic... [more]
RL14_HALWD3.385e-2145.3150S ribosomal protein L14P OS=Haloquadratum walsby... [more]
RL14_PYRAR5.774e-2139.5850S ribosomal protein L14P OS=Pyrobaculum arsenati... [more]
RL14_METBF9.848e-2142.3150S ribosomal protein L14P OS=Methanosarcina barke... [more]
RL14_METAC9.848e-2140.7750S ribosomal protein L14P OS=Methanosarcina aceti... [more]
RL14_NATPD1.680e-2041.8050S ribosomal protein L14P OS=Natronomonas pharaon... [more]
RL14_NANEQ1.680e-2043.4450S ribosomal protein L14P OS=Nanoarchaeum equitan... [more]
RL14_METMA2.865e-2040.0050S ribosomal protein L14P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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