CX294317
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18 Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 1 LAAKMSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432 + AK SK R + G K + CAD+TGA+ + I+SV G G R P +GD+ TV ++ AV++RQ+K RR +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P++ S A IV Sbjct: 1 MKAKQSKTPRALATGTK------------LTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17 Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432 L + + CAD+TGA+ + I+SV G G NR P +GD+ TV ++ AV+VRQ+K +RR +G+ + FE+NA +++N G+ +G+ I GP+ +E A+ +P++ S A I+ Sbjct: 12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17 Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 1 Query: 49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432 K ++ + A + AD+TGA+ + +ISV +GR NR+P A +GD+ + +V ++ V++RQ+K +RR G+ + FEDNA V+V+ + KG+ I GP+ +E A+ + +I S A IV Sbjct: 5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16 Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1 Query: 70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432 L + + C+D+TGA+ + ++SV G R P +GD+ +V + AV++RQ+K RR +G+ + FEDNA V++N +GE KG+ I G + +E A+ +P+IAS A IV Sbjct: 12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16 Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432 + CAD+TGA+ + ++SV G G R P + D+ +V ++ AV++RQ+K RR G+ + FEDNA V+V+ K E +G+ I GP+ +E A +PRI S A IV Sbjct: 18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14 Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1 Query: 13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGR 156 MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGR Sbjct: 1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13 Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393 AD++GAK + I V G GR A +GD+++ATV V+ AVIVRQ+K RR DG ++ F++NA V++ P GE +G+ I GP+G+E D Sbjct: 11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12 Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1 Query: 88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393 +N AD+TGAK + I+V G +L A VGD+++A V V+ AV+VR KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E D Sbjct: 8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12 Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393 AD+TGAK + I V G GR A +GD+++ATV V+ AVIVR +K RR DG ++ F++NA VI+N GE +G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12 Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1 Query: 97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393 AD+TGAK + I V G GR A +GD+++ATV V+ AVIVR +K RR DG ++ F++NA VI+N GE +G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108 The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 103
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bpback to top |