CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig426 contig Ccv1_Contig426:6..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METB6 (50S ribosomal protein L14P OS=Methanoregula boonei (strain 6A8) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.503e-18
Identity = 52/144 (36.11%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    1 LAAKMSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            + AK SK  R  + G K            + CAD+TGA+ + I+SV G  G   R P   +GD+   TV          ++ AV++RQ+K  RR +G+ + F+DNA V+V+ K E KG+ I GP+ +E A+ +P++ S A  IV
Sbjct:    1 MKAKQSKTPRALATGTK------------LTCADNTGARIVQIVSVFGYHGVRRRQPKMGLGDIATVTVKKGTPDMRKKLVRAVVIRQKKEMRRPNGLRVSFDDNAVVVVDEKNEPKGTEIKGPVAREVAERYPKLGSMATIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METLZ (50S ribosomal protein L14P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.019e-17
Identity = 44/121 (36.36%), Postives = 74/121 (61.16%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            L   + + CAD+TGA+ + I+SV G  G  NR P   +GD+   TV          ++ AV+VRQ+K +RR +G+ + FE+NA +++N  G+ +G+ I GP+ +E A+ +P++ S A  I+
Sbjct:   12 LQTGSKMVCADNTGARVVQIVSVFGYHGVKNRQPKMGLGDLATVTVKKGTPDMKRKLVRAVVVRQKKEFRRPNGLRVSFEENAMILLNENGDPRGTDIKGPVAREVAERFPKVGSMATIII 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_UNCMA (50S ribosomal protein L14P OS=Uncultured methanogenic archaeon RC-I GN=rpl14p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.331e-17
Identity = 45/128 (35.16%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   49 KFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            K ++   +  A  +  AD+TGA+ + +ISV   +GR NR+P A +GD+ + +V          ++  V++RQ+K +RR  G+ + FEDNA V+V+   + KG+ I GP+ +E A+ + +I S A  IV
Sbjct:    5 KAKIPRSVHTATRLEVADNTGARLVEVISVLKYRGRKNRMPKAGIGDIFIGSVKKGTPEMRKTIVRCVVIRQKKEYRRPSGLRVSFEDNACVLVDDNNDPKGTEIKGPVAREVAERYAKIGSTATIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METMJ (50S ribosomal protein L14P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.282e-16
Identity = 44/121 (36.36%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   70 LPVAATVNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            L   + + C+D+TGA+ + ++SV    G   R P   +GD+   +V          +  AV++RQ+K  RR +G+ + FEDNA V++N +GE KG+ I G + +E A+ +P+IAS A  IV
Sbjct:   12 LATGSRMVCSDNTGARLVEVVSVDRYHGVRRRQPCLGLGDVATVSVKKGTPDMRRKLEKAVVIRQKKEIRRPNGIRLSFEDNAMVLINERGEPKGTEIKGAVPREIAERFPKIASMATTIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_METHJ (50S ribosomal protein L14P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.592e-16
Identity = 44/115 (38.26%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXXVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 432
            + CAD+TGA+ + ++SV G  G   R P   + D+   +V          ++ AV++RQ+K  RR  G+ + FEDNA V+V+ K E +G+ I GP+ +E A  +PRI S A  IV
Sbjct:   18 LTCADNTGARVVQVVSVFGYHGVRRRQPKLGLADIATVSVKKGTPDMRRKLVRAVVIRQKKEIRRPSGLRLSFEDNAVVVVDDKNEPRGTEIKGPVAREVAIRYPRIGSMATIIV 132          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 36/48 (75.00%), Postives = 44/48 (91.67%), Query Frame = 1
Query:   13 MSKRGRGGSAGNKFRMSLGLPVAATVNCADDTGAKNLYIISVKGIKGR 156
            MSKRGRGG++G KFR+SLGLPV A +NCAD+TGAKNL++I+V GIKGR
Sbjct:    1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_SACEN (50S ribosomal protein L14 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.871e-13
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD++GAK +  I V G  GR      A +GD+++ATV             V+ AVIVRQ+K  RR DG ++ F++NA V++ P GE +G+ I GP+G+E  D
Sbjct:   11 ADNSGAKEILTIRVLGGSGRRY----AGIGDIIVATVKDAIPGANVKKGEVVKAVIVRQKKEKRRADGSYIRFDENAAVLIKPSGEPRGTRIFGPVGRELRD 108          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_DEHE1 (50S ribosomal protein L14 OS=Dehalococcoides ethenogenes (strain 195) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 43/105 (40.95%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   88 VNCADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            +N AD+TGAK +  I+V G   +L     A VGD+++A V             V+ AV+VR  KP+ R DG ++ F+DNA VI+N K E KG+ I GP+ +E  D
Sbjct:    8 LNVADNTGAKKIMCINVLGGSRKLQ----AKVGDVIVAAVKKSSPDAQAKSGTVVKAVVVRITKPYARPDGSYIKFDDNAAVILNDKMEPKGTRIFGPVARELRD 108          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 1
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_METB63.503e-1836.1150S ribosomal protein L14P OS=Methanoregula boonei... [more]
RL14_METLZ1.019e-1736.3650S ribosomal protein L14P OS=Methanocorpusculum l... [more]
RL14_UNCMA1.331e-1735.1650S ribosomal protein L14P OS=Uncultured methanoge... [more]
RL14_METMJ4.282e-1636.3650S ribosomal protein L14P OS=Methanoculleus maris... [more]
RL14_METHJ5.592e-1638.2650S ribosomal protein L14P OS=Methanospirillum hun... [more]
RL23_ONCVO1.377e-1475.0060S ribosomal protein L23 (Fragment) OS=Onchocerca... [more]
RL14_SACEN9.871e-1341.1850S ribosomal protein L14 OS=Saccharopolyspora ery... [more]
RL14_DEHE13.751e-1240.9550S ribosomal protein L14 OS=Dehalococcoides ethen... [more]
RL14_CLAMS3.751e-1242.1650S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM33.751e-1242.1650S ribosomal protein L14 OS=Clavibacter michigane... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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