CX294317

Overview
NameCX294317
Unique NameCX294317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length559
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_RENSM (50S ribosomal protein L14 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILAIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_ARTS2 (50S ribosomal protein L14 OS=Arthrobacter sp. (strain FB24) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_ARTCA (50S ribosomal protein L14 OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_ARTAT (50S ribosomal protein L14 OS=Arthrobacter aurescens (strain TC1) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.417e-11
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK L  I V G  GR      A +GD ++ATV             ++ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D  + RI S A  ++
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRELRDKKFMRIISLAPEVL 122
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.074e-11
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AV+VR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX----VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK+L +I V G  G   R  S  +GD+V+A+V              V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX----VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK+L +I V G  G   R  S  +GD+V+A+V              V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 44/116 (37.93%), Postives = 66/116 (56.90%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 432
            AD+TGAK +  I V G  GR      A +GD+++ATV             V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  +  + RI S A  ++
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRELREKKFMRIISLAPEVL 122
[Close]
BLAST of CX294317 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.239e-11
Identity = 41/102 (40.20%), Postives = 58/102 (56.86%), Query Frame = 1 
Query:   97 ADDTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVXXXXXXXXXX---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 393
            AD+TGAK +  I V G  G   R  S  VGD ++ +V             V  AV+VR RK  RR DG ++ F+DNA V++ P+GEM+G+ + GP+ +E  D
Sbjct:   11 ADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108
The following BLAST results are available for this feature:
BLAST of CX294317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RL14_RENSM5.417e-1140.2050S ribosomal protein L14 OS=Renibacterium salmoni... [more]
RL14_ARTS25.417e-1140.2050S ribosomal protein L14 OS=Arthrobacter sp. (str... [more]
RL14_ARTCA5.417e-1140.2050S ribosomal protein L14 OS=Arthrobacter chloroph... [more]
RL14_ARTAT5.417e-1140.2050S ribosomal protein L14 OS=Arthrobacter aurescen... [more]
RL14_THEFY7.074e-1137.0750S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RL14_KOCRD7.074e-1139.2250S ribosomal protein L14 OS=Kocuria rhizophila (s... [more]
RL14_TROWT9.239e-1140.1750S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_TROW89.239e-1140.1750S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_KINRD9.239e-1137.9350S ribosomal protein L14 OS=Kineococcus radiotole... [more]
RL14_GRAFK9.239e-1140.2050S ribosomal protein L14 OS=Gramella forsetii (st... [more]

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Properties
Property NameValue
Genbank descriptionC05015B01SK FlavSen1 Citrus clementina cDNA clone C05015B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294317 ID=CX294317; Name=CX294317; organism=Citrus clementina; type=EST; length=559bp
TTAGCTGCGAAAATGTCGAAGCGAGGACGTGGAGGATCAGCAGGTAACAA
GTTCAGGATGTCACTGGGTTTGCCAGTGGCAGCAACTGTGAACTGTGCTG
ACGACACTGGGGCAAAGAACCTTTACATCATCTCAGTTAAGGGAATCAAA
GGTCGCCTCAACCGTTTGCCGTCTGCCTGTGTTGGAGACATGGTTATGGC
TACCGTGAAGAAAGGGAAGCCTGATCTTAAGAAGAAGGTGATGCCCGCCG
TCATTGTAAGGCAGCGCAAGCCATGGCGCAGAAAGGATGGTGTCTTCATG
TACTTTGAAGATAATGCTGGTGTTATTGTGAATCCAAAGGGAGAAATGAA
GGGTTCTGCCATCACCGGTCCAATTGGTAAAGAGTGTGCTGATTTGTGGC
CGAGGATTGCAAGTGCAGCCAATGCTATCGTTTAAGACATTCAAGACCGA
TAACCTATATCATCCTTTTTGTTGCACTAAAAAGAATTCTGGTGAAGTTT
CATAGTAGGAAGGAGTAAAGCTTTTCTGTGAACTTTCTGTATGATTTGTT
ATTCTAGTT
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