CX294318

Overview
NameCX294318
Unique NameCX294318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RALEJ (30S ribosomal protein S11 OS=Ralstonia eutropha (strain JMP134) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++  +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RALEH (30S ribosomal protein S11 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++  +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PHEZH (30S ribosomal protein S11 OS=Phenylobacterium zucineum (strain HLK1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            GVAH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L + +               +SALRAL   GM I  I DVTPIP
Sbjct:   19 GVAHVNASFNNTMVTITDAQGNTISWSSAGLMGFKGSR-KSTPYAAQMAAEDAGRKAAEHGVRTLEVNVSG--------PGSGRESALRALQAVGMTITTIRDVTPIP 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PARDP (30S ribosomal protein S11 OS=Paracoccus denitrificans (strain Pd 1222) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 47/134 (35.07%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 468
            M+R KTR  ++E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ +E G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKTRIKRKERKNIAT---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGKKAQEHGVRTLEVEVQG--------PGSGRESALRALAAVGFNITAIRDVTPI 116          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_LEPCP (30S ribosomal protein S11 OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            GVAH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E GI  L +K++              +S++RALA  G++I  I DVTP+P
Sbjct:   24 GVAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVAAEVAGRAAQEQGIKNLDVKIKG--------PGPGRESSVRALASLGIRIASISDVTPVP 122          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_DINSH (30S ribosomal protein S11 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 47/134 (35.07%), Postives = 69/134 (51.49%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 468
            M+R K R  K+E   +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ +E G+  L ++++              +SALRALA  G  I  I DVTPI
Sbjct:    1 MARDKQRTKKKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAIAWSSAGTMGFKGSR-KSTPYAAQMAAEDAGKKAQEHGVKTLEVQVQG--------PGSGRESALRALAAVGFNITAIRDVTPI 116          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_CUPTR (30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++  +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAIIEDVTPIP 120          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RHORT (30S ribosomal protein S11 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 1
Query:   64 AMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            A   +K R  + +N+T G           +AH+ ASFN+T I +TD+ G        G    K  R +S+PYAA +AA+D  ++ +E G+  L + ++              +SALRAL   G ++  I+DVTPIP
Sbjct:    2 AKPAQKLRRRERKNITSG-----------IAHVSASFNNTKITITDVQGNAIAWSSAGAQGFKGSR-KSTPYAAQVAAEDAGRKAQEHGMKTLEVMVKG--------PGSGRESALRALQSVGFQVTSIKDVTPIP 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RALPJ (30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNNLGIKIQLIEDVTPVP 121          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RALME (30S ribosomal protein S11 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G        GG   K  R +S+P+AA +AA++  +  ++ GI  L ++++              +SA+RAL   G+KI  IEDVTP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATAGGQGFKGSR-KSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNALGIKIAVIEDVTPVP 121          
The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RS11_RALEJ6.137e-1237.9630S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]
RS11_RALEH6.137e-1237.9630S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]
RS11_PHEZH6.137e-1239.8130S ribosomal protein S11 OS=Phenylobacterium zuci... [more]
RS11_PARDP6.137e-1235.0730S ribosomal protein S11 OS=Paracoccus denitrific... [more]
RS11_LEPCP6.137e-1237.9630S ribosomal protein S11 OS=Leptothrix cholodnii ... [more]
RS11_DINSH6.137e-1235.0730S ribosomal protein S11 OS=Dinoroseobacter shiba... [more]
RS11_CUPTR6.137e-1237.9630S ribosomal protein S11 OS=Cupriavidus taiwanens... [more]
RS11_RHORT8.015e-1233.0930S ribosomal protein S11 OS=Rhodospirillum rubrum... [more]
RS11_RALPJ8.015e-1237.0430S ribosomal protein S11 OS=Ralstonia pickettii (... [more]
RS11_RALME8.015e-1237.0430S ribosomal protein S11 OS=Ralstonia metallidura... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015B02SK FlavSen1 Citrus clementina cDNA clone C05015B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bp
GGCTGCAGGGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTC
CGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGG
AAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGC
GTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGA
CTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTA
AAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAA
GATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAA
GCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTC
AGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATA
GAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAG
AAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCTCCATAACGTTCAG
ATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTAGATGCAGAGTT
ATTTCCCATTTTGTTGTTGGATGT
back to top