CX294318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURCM (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURCJ (30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BORPE (30S ribosomal protein S11 OS=Bordetella pertussis GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +S++RAL G+KI I D+TP+P Sbjct: 23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BORPA (30S ribosomal protein S11 OS=Bordetella parapertussis GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +S++RAL G+KI I D+TP+P Sbjct: 23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BORBR (30S ribosomal protein S11 OS=Bordetella bronchiseptica GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +S++RAL G+KI I D+TP+P Sbjct: 23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_BORA1 (30S ribosomal protein S11 OS=Bordetella avium (strain 197N) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +S++RAL G+KI I D+TP+P Sbjct: 23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121 The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bpback to top |