CX294318

Overview
NameCX294318
Unique NameCX294318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PSEPF (30S ribosomal protein S11 OS=Pseudomonas fluorescens (strain Pf0-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNGCGYKIASITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PSEFS (30S ribosomal protein S11 OS=Pseudomonas fluorescens (strain SBW25) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNGCGYKIASITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PSEF5 (30S ribosomal protein S11 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNGCGYKIASITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PSE14 (30S ribosomal protein S11 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNGCGYKIASITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PASMU (30S ribosomal protein S11 OS=Pasteurella multocida GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEVVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_LARHH (30S ribosomal protein S11 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++               S++RAL   G KI  I DVTPIP
Sbjct:   20 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQIAAEAAGKVAQEYGVKNLEVRIKG--------PGPGRDSSVRALNALGFKITSISDVTPIP 118
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HAES2 (30S ribosomal protein S11 OS=Haemophilus somnus (strain 2336) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEVVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HAES1 (30S ribosomal protein S11 OS=Haemophilus somnus (strain 129Pt) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEVVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HAEIE (30S ribosomal protein S11 OS=Haemophilus influenzae (strain PittEE) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEIVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
[Close]
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HAEI8 (30S ribosomal protein S11 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 40/110 (36.36%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:  142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            V GVAHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+  ++  KE G+  L + ++              +S +RAL  +G +I  I DVTPIP
Sbjct:   17 VDGVAHIHASFNNTIVTITDRQGNALAWATAGGSGFRGSR-KSTPFAAQVAAERCAEIVKEFGLKNLEVMVKG--------PGPGRESTIRALNAAGFRITNITDVTPIP 117
The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RS11_PSEPF8.862e-1137.2730S ribosomal protein S11 OS=Pseudomonas fluoresce... [more]
RS11_PSEFS8.862e-1137.2730S ribosomal protein S11 OS=Pseudomonas fluoresce... [more]
RS11_PSEF58.862e-1137.2730S ribosomal protein S11 OS=Pseudomonas fluoresce... [more]
RS11_PSE148.862e-1137.2730S ribosomal protein S11 OS=Pseudomonas syringae ... [more]
RS11_PASMU8.862e-1136.3630S ribosomal protein S11 OS=Pasteurella multocida... [more]
RS11_LARHH8.862e-1136.1130S ribosomal protein S11 OS=Laribacter hongkongen... [more]
RS11_HAES28.862e-1136.3630S ribosomal protein S11 OS=Haemophilus somnus (s... [more]
RS11_HAES18.862e-1136.3630S ribosomal protein S11 OS=Haemophilus somnus (s... [more]
RS11_HAEIE8.862e-1136.3630S ribosomal protein S11 OS=Haemophilus influenza... [more]
RS11_HAEI88.862e-1136.3630S ribosomal protein S11 OS=Haemophilus influenza... [more]

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Properties
Property NameValue
Genbank descriptionC05015B02SK FlavSen1 Citrus clementina cDNA clone C05015B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bp
GGCTGCAGGGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTC
CGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGG
AAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGC
GTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGA
CTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTA
AAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAA
GATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAA
GCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTC
AGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATA
GAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAG
AAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCTCCATAACGTTCAG
ATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTAGATGCAGAGTT
ATTTCCCATTTTGTTGTTGGATGT
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