CX294318

Overview
NameCX294318
Unique NameCX294318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_CHRVO (30S ribosomal protein S11 OS=Chromobacterium violaceum GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.862e-11
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471
            G+ H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL   G KI  I DVTP+P
Sbjct:   21 GIVHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEHAGKVAQEYGVKNLEVRIKG--------PGPGRESAVRALNSLGFKITSISDVTPVP 119
The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RS11_CHRVO8.862e-1135.1930S ribosomal protein S11 OS=Chromobacterium viola... [more]

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Properties
Property NameValue
Genbank descriptionC05015B02SK FlavSen1 Citrus clementina cDNA clone C05015B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bp
GGCTGCAGGGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTC
CGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGG
AAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGC
GTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGA
CTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTA
AAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAA
GATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAA
GCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTC
AGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATA
GAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAG
AAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCTCCATAACGTTCAG
ATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTAGATGCAGAGTT
ATTTCCCATTTTGTTGTTGGATGT
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