CX294318

Overview
NameCX294318
Unique NameCX294318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9828 contig Ccv1_Contig9828:5..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METVS (30S ribosomal protein S11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps11p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.321e-27
Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+ HI+AS+N+T +HVTD++G ET+ +++GGM V+  RDESSPYAAM AA  +++  ++ GI  +H+K+RA            AQ+A+RAL+R+G+KIGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDVTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIAELMRDKGIDQVHVKVRAAGGQKSKNPGPGAQAAIRALSRAGIKIGRIEDATPIPHDGT 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METST (30S ribosomal protein S11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps11p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +GVAH+++SFN+T I VTD++G ET+ + +GG  V++DR ESSP+AAM AA  V+   KE GI  LHIK+RA            AQ+ +RALAR+G+KIG+IEDVTPIP D T
Sbjct:    7 WGVAHVYSSFNNTIITVTDITGAETITQWSGGKVVRSDRQESSPFAAMEAANRVADDIKEKGIAGLHIKVRASGGNGPRTPGPGAQATIRALARAGIKIGKIEDVTPIPHDGT 119          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METMP (30S ribosomal protein S11P OS=Methanococcus maripaludis GN=rps11p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METM7 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps11p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METM5 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps11p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HALWD (30S ribosomal protein S11P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27
Identity = 61/116 (52.59%), Postives = 81/116 (69.83%), Query Frame = 1
Query:  136 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            E  +GVAH+ ASFN+T I VTDL+G ET+V+ +GG  VK +RDE+SPYAAM  A+ V++  K  GI  LH+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    8 EKRWGVAHVHASFNNTLITVTDLTGAETIVKSSGGAVVKQNRDEASPYAAMQMAESVAEDIKAAGIDGLHVRVRGPGGNGNKSPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 123          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METJA (30S ribosomal protein S11P OS=Methanocaldococcus jannaschii GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.754e-27
Identity = 57/113 (50.44%), Postives = 80/113 (70.80%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+ HI++S+N+T IH TD++G ET+ R++GG   +  RDE SPYAAM AA  +++  KE GI  +HIK+RA            AQ+A+RALAR+G++IGRIEDVTP+P D T
Sbjct:    9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METTH (30S ribosomal protein S11P OS=Methanobacterium thermoautotrophicum GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            +G+A+I++SFN+T I +TD++G ET+ + +GG  V+ADR ESSP+AAM AA   +   KE GI  LHIK+RA            AQ+A+RALAR+GM+IG+IEDVTPIP D T
Sbjct:    7 WGIANIYSSFNNTIITITDITGAETITQWSGGKVVRADRQESSPFAAMEAATRAADDAKEKGIVGLHIKVRAPGGNGPRTPGPGAQAAIRALARAGMRIGKIEDVTPIPHDGT 119          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_THEAC (30S ribosomal protein S11P OS=Thermoplasma acidophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 63/112 (56.25%), Postives = 80/112 (71.43%), Query Frame = 1
Query:  148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS+  KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:    8 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSEALKEKEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 119          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_SULSO (30S ribosomal protein S11P OS=Sulfolobus solfataricus GN=rps11p PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1
Query:  145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 480
            +G+AHI+AS N+T + ++DL+G E + R +GGM VKADR++SSPYAAMLAA   +    E GI ALHIK+RA            AQ A+RALAR+G  IGRIEDVTPIP D+
Sbjct:    9 WGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDT 120          
The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RS11_METVS2.321e-2750.4430S ribosomal protein S11P OS=Methanococcus vannie... [more]
RS11_METST3.960e-2753.9830S ribosomal protein S11P OS=Methanosphaera stadt... [more]
RS11_METMP3.960e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM73.960e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM53.960e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_HALWD5.171e-2752.5930S ribosomal protein S11P OS=Haloquadratum walsby... [more]
RS11_METJA6.754e-2750.4430S ribosomal protein S11P OS=Methanocaldococcus j... [more]
RS11_METTH1.152e-2653.1030S ribosomal protein S11P OS=Methanobacterium the... [more]
RS11_THEAC1.965e-2656.2530S ribosomal protein S11P OS=Thermoplasma acidoph... [more]
RS11_SULSO1.965e-2655.3630S ribosomal protein S11P OS=Sulfolobus solfatari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015B02SK FlavSen1 Citrus clementina cDNA clone C05015B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bp
GGCTGCAGGGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTC
CGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGG
AAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGC
GTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGA
CTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTA
AAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAA
GATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAA
GCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTC
AGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATA
GAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAG
AAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCTCCATAACGTTCAG
ATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTAGATGCAGAGTT
ATTTCCCATTTTGTTGTTGGATGT
back to top