CX294318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_KORCO (30S ribosomal protein S11P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps11p PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23 Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 477 GVAHI++SFNDT +H+TD++G ETL R +GGM V ADR E SPYAA+ AA ++ + GIT L +K+RA A +A+R L+RS + + R+EDVTPIP D Sbjct: 10 GVAHIYSSFNDTIVHITDITGAETLARYSGGMFVDADRLEGSPYAALKAAMAAAKEAQRKGITHLIVKVRAPGGIKSRIPGPGATAAIRGLSRSQLTLIRVEDVTPIPHD 119
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_PIG (40S ribosomal protein S14 (Fragment) OS=Sus scrofa GN=RPS14 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23 Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1 Query: 76 RKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV 306 RK +E KEE V +LGP V +GE+VFGV HIFAS NDTF+HVTDLSG E++ R+TGGMK+KADR E SPY AMLAAQ V Sbjct: 2 RKGKEKKEEQVISLGPQVAEGENVFGVCHIFASPNDTFVHVTDLSGXESICRVTGGMKMKADRXEXSPYXAMLAAQAV 79
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_NANEQ (30S ribosomal protein S11P OS=Nanoarchaeum equitans GN=rps11p PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.722e-22 Identity = 58/112 (51.79%), Postives = 75/112 (66.96%), Query Frame = 1 Query: 145 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRA-XXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 477 +GVAHI++S N+T IH+TD++G ET+ +GGM V ADR E SP AA+LAA+ + KE GIT LHIK+RA A +A++ LAR G+KIG IEDVTP P D Sbjct: 6 WGVAHIYSSENNTIIHITDITGAETIAVGSGGMVVNADRLEGSPTAAILAAKRAAALAKERGITGLHIKVRAPGGHNGPWIPGPGASAAIKTLAREGLKIGIIEDVTPTPHD 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_TOBAC (40S ribosomal protein S14 (Fragment) OS=Nicotiana tabacum GN=RPS14 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14 Identity = 42/55 (76.36%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 319 KELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483 KELGI ALHIKLRA AQSALRALARSGMKIGRIEDVTPIPTDST Sbjct: 1 KELGINALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 55
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_CAUSK (30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.250e-13 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L + + +SALRAL +GM I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_PELCD (30S ribosomal protein S11 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.468e-13 Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AHI A+FN+T + +TD++G G M K R +S+P+AA +AA+D +++ E G+ ++ ++++ +SALRAL+ +G+ I I+DVTPIP Sbjct: 21 GIAHIQATFNNTIVTITDIAGNVISWSTCGTMNFKGSR-KSTPFAAQIAAEDAAKKAMEHGLRSVEVRVKG--------PGSGRESALRALSSAGLNISVIKDVTPIP 119
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_CAUCR (30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L + + +SALRAL +GM I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_CAUCN (30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12 Identity = 44/108 (40.74%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L + + +SALRAL +GM I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDAGKKAAEHGVKTLEVNVSG--------PGSGRESALRALQAAGMTITTIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_AZOC5 (30S ribosomal protein S11 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 2.755e-12 Identity = 43/108 (39.81%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA LAA+D +++ E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQLAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METS4 (30S ribosomal protein S11 OS=Methylobacterium sp. (strain 4-46) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117 The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bpback to top |