CX294318
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_METNO (30S ribosomal protein S11 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 1 Query: 142 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_HYPNA (30S ribosomal protein S11 OS=Hyphomonas neptunium (strain ATCC 15444) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12 Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+ H+ +SFN+T + +TD G +G M K R +S+PYAA +AA+D +++ KE G+ + +++R +SALRAL +G+ + I D TPIP Sbjct: 19 GIVHVNSSFNNTMVTITDAQGNTISWSSSGVMNFKGSR-KSTPYAAQMAAEDAAKKAKEHGLQTVEVRVRG--------PGSGRESALRALQAAGLTVTAINDTTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_SPHWW (30S ribosomal protein S11 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 42/108 (38.89%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T + +TD G G M K R +S+PYAA +AA+D ++ E G+ + +K+ +SALRAL G I I+DVTPIP Sbjct: 19 GVAHVSASFNNTMVTITDAQGNAISWSSAGHMGFKGSR-KSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSG--------PGSGRESALRALQSVGFTITTIQDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_AZOSE (30S ribosomal protein S11 OS=Azoarcus sp. (strain EbN1) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + +E G+ L ++++ +SA+RAL GMKI I D+TPIP Sbjct: 19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_ZYMMO (30S ribosomal protein S11 OS=Zymomonas mobilis GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 43/108 (39.81%), Postives = 58/108 (53.70%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAAEDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFHITSIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_XANP2 (30S ribosomal protein S11 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 148 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D +++ E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFLVTSIRDVTPIP 117
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_WIGBR (30S ribosomal protein S11 OS=Wigglesworthia glossinidia brevipalpis GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 45/126 (35.71%), Postives = 67/126 (53.17%), Query Frame = 1 Query: 94 KEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 471 K++N ++ + + G+AHI ASFN+T + +TD G +GG + R +S+P+AA +AA+ S+ KE GI L I ++ +S +RAL SG KI I DVTPIP Sbjct: 3 KKQNSSISRKKIKRQILEGIAHIHASFNNTIVTITDRQGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCSEIAKEYGIKNLEIMVKG--------PGPGRESTIRALNSSGFKITNITDVTPIP 119
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_SILST (30S ribosomal protein S11 OS=Silicibacter sp. (strain TM1040) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 46/134 (34.33%), Postives = 70/134 (52.24%), Query Frame = 1 Query: 67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 468 M+R KTR ++E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D ++ ++ G+ L ++++ +SALRALA G I I DVTPI Sbjct: 1 MARDKTRTKRKERKNIAS---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQDHGVKTLEVEVQG--------PGSGRESALRALAAIGFNITNIRDVTPI 116
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS11_RHOS5 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12 Identity = 45/134 (33.58%), Postives = 73/134 (54.48%), Query Frame = 1 Query: 67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 468 M+R KTR ++E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D +++ +E G+ + ++++ +SALRALA +G+ I I DVTP+ Sbjct: 1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQEHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116 The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 241
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bpback to top |