CX294320

Overview
NameCX294320
Unique NameCX294320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig528 contig Ccv1_Contig528:1..567. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294320 vs. ExPASy Swiss-Prot
Match: DEGS2_BOVIN (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Bos taurus GN=DEGS2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 9.439e-27
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKR 272
            ++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IP   L  VR++APEYY  L  + SW +V++ ++ D ++GPF+R+KR
Sbjct:  225 ISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHMEHHDFPSIPSCNLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFDDSLGPFARVKR 314          
BLAST of CX294320 vs. ExPASy Swiss-Prot
Match: DEGS2_HUMAN (Sphingolipid delta(4)-desaturase/C4-hydroxylase DES2 OS=Homo sapiens GN=DEGS2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.233e-26
Identity = 48/90 (53.33%), Postives = 71/90 (78.89%), Query Frame = 3
Query:    3 MAGHFISEHYVFNPDQETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKR 272
            ++GHF++EHY+F    ETYSYYGPLN++T++VGYH EHHDFP IPG  L  VR++APEYY  L  + SW +V++ ++ + ++GP++R+KR
Sbjct:  225 ISGHFVAEHYMFLKGHETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDFVFEDSLGPYARVKR 314          
BLAST of CX294320 vs. ExPASy Swiss-Prot
Match: DEGS_SCHPO (Dihydroceramide delta(4)-desaturase OS=Schizosaccharomyces pombe GN=dsd1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.142e-22
Identity = 48/102 (47.06%), Postives = 63/102 (61.76%), Query Frame = 3
Query:    6 AGHFISEHYVFNPDQ------------ETYSYYGPLNFLTWHVGYHNEHHDFPRIPGNKLHKVREVAPEYYQGLASYKSWSQVIYMYIMDGTVGPFSRMKRK 275
            AGHF+SEHY     +            ET+SYYGPLNF  ++ GYH EHHDFP +   ++ KVRE+APE+Y  +   KSW  +IY +I D  VG + R+KRK
Sbjct:  245 AGHFLSEHYNMTRTRLIASGPGKETPLETFSYYGPLNFFVYNAGYHIEHHDFPYVAWTRIGKVRELAPEFYDNIPDCKSWCGIIYQFITDSNVGMWCRVKRK 346          
The following BLAST results are available for this feature:
BLAST of CX294320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEGS2_BOVIN9.439e-2754.44Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]
DEGS2_HUMAN1.233e-2653.33Sphingolipid delta(4)-desaturase/C4-hydroxylase DE... [more]
DEGS_SCHPO3.142e-2247.06Dihydroceramide delta(4)-desaturase OS=Schizosacch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015B07SK FlavSen1 Citrus clementina cDNA clone C05015B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294320 ID=CX294320; Name=CX294320; organism=Citrus clementina; type=EST; length=567bp
CCATGGCTGGTCACTTCATTTCAGAACATTATGTCTTCAACCCTGACCAG
GAGACATATTCTTACTATGGCCCCCTCAATTTTCTAACGTGGCATGTGGG
ATACCACAATGAGCACCATGATTTCCCAAGAATTCCTGGAAACAAGCTCC
ACAAGGTCAGGGAGGTTGCACCTGAGTATTATCAGGGTTTAGCATCTTAT
AAATCTTGGAGCCAGGTTATATACATGTATATTATGGATGGGACAGTCGG
CCCCTTTAGCCGAATGAAGAGAAAGCCTTCTGCAACAAAGAAATCCGAAT
AGATGCTCCCATCTCTACTTTTTGGTTCAATTCCTTCTCCTCCAACCTTT
AGTTCAAAATGAGTTGCCACAGTAATTATCATTTTTATTTTTTGGTTCCT
ATTATATGTAACATTCTTTGAGGAATTAGAAATTACGTACTCTAGTTTTA
GACTGAAGGGATGAGTCAGTTTTCATTACTTTTAAACTGTTCTTTCTATA
TGTTATGTAGCAGAATTTTGGCTTCGTGTTGCCGTTTGATCGTGAAGACA
TCTTACGATTCTGATTC
back to top