CX294322

Overview
NameCX294322
Unique NameCX294322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14207 contig Ccv1_Contig14207:739..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX1C_ORYSJ (Vacuolar cation/proton exchanger 1c OS=Oryza sativa subsp. japonica GN=CAX1c PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.544e-19
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV 252
            K+DISLG+ LGSATQI++ VVP+ +I+SW+  I MDL+FNLLETGS            QD   HY+KG  L+  Y VI  CFFV
Sbjct:  355 KIDISLGITLGSATQISMLVVPVILIVSWVNAIPMDLDFNLLETGSLAMAVITTAFTLQDDKWHYLKGLNLVFSYIVIAVCFFV 438          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 8.079e-18
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQ-DGTSHYMKGFVLLLCYFVIGACFFVSNRP 264
            KLD+SLGVA+GS+ QI++F VP CV+I W+MG  MDLN  L ET +            Q +GTS+Y K  +L+LCY ++ A FFV   P
Sbjct:  357 KLDLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNLQLFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.130e-11
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFV--SNRPLDSDQNGV 288
            K+D++LGVA+GS+ Q+A+FV P  V++ W++ + M LNF+  ET +             DG S++++G + L  Y +I   FF     + LDS  N +
Sbjct:  314 KMDLALGVAIGSSLQVALFVTPFMVLVGWMIDVPMTLNFSTFETATLFIAVFLSNYLILDGESNWLEGVMSLAMYILIAMAFFYYPDEKTLDSIGNSL 411          
The following BLAST results are available for this feature:
BLAST of CX294322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX1C_ORYSJ9.544e-1953.57Vacuolar cation/proton exchanger 1c OS=Oryza sativ... [more]
CAX6_ARATH8.079e-1848.31Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
VCX1_YEAST1.130e-1134.69Vacuolar calcium ion transporter OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC05015B09SK FlavSen1 Citrus clementina cDNA clone C05015B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294322 ID=CX294322; Name=CX294322; organism=Citrus clementina; type=EST; length=508bp
AAGTTGGACATTTCACTGGGTGTTGCGTTGGGTTCTGCAACTCAAATTGC
CGTATTTGTGGTTCCATTGTGCGTGATTATTTCTTGGATTATGGGGATTA
CAATGGATCTTAACTTCAATCTCCTTGAGACTGGCTCTCTTGCTCTAGCA
ATTATTGCCACAGCCTTCACTCTACAGGATGGAACTTCTCATTACATGAA
AGGATTTGTTCTTCTGCTATGCTACTTTGTTATTGGAGCATGCTTTTTTG
TATCCAACAGACCACTCGACTCCGACCAGAATGGGGTCAAAATGGGCCTT
CAATCATCAACTGGAACAGTCCTCAGAGCATGATAAGACTAATTGGGCCT
TCTGGGGTCAGACTCTTCAATTCGTCATTGAAACTTTCAAATATAAGGTG
CATTGCTAATTCTTTCATTTGGCGTCGCCAGCTGGAATTTAGAAGCCGGG
CATAGCATTTTACATGTCGAGAAAGTTTCCATGGATGCCTTCTCATTTGA
GATGAACA
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