CX294348

Overview
NameCX294348
Unique NameCX294348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_BOVIN (Delta(14)-sterol reductase OS=Bos taurus GN=TM7SF2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.932e-21
Identity = 56/157 (35.67%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   81 SFIFCIFLYIKGHLAPSST--DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            +FIF + LY+K  LAP+S     G+ GN+I DF+ G EL PRI  +FD K F   R G++ W ++ +   I++ E       +M +     L+YV     +E    +TMDI HD  GF + +G L WVP  Y+    +L+ HP  LG  ++S +  +
Sbjct:  141 AFIFSLLLYLKALLAPASALAPGGNSGNLIYDFFLGRELNPRIC-SFDFKYFCELRPGLIGWVLINLALLIQEAELRGSPSLAMWLVNGFQLLYVGDALWYEEAVLTTMDIIHDGFGFMLAFGDLAWVPFTYSLQAQFLLYHPQPLGWPLASFICLI 296          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_HUMAN (Delta(14)-sterol reductase OS=Homo sapiens GN=TM7SF2 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 3.296e-21
Identity = 56/157 (35.67%), Postives = 84/157 (53.50%), Query Frame = 3
Query:   81 SFIFCIFLYIKGHLAPSST--DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            +FIF +FLY+K  +AP S     G+ GN I DF+ G EL PRI   FD K F   R G++ W ++ +   +K+ E       +M +     L+YV      E    +TMDI HD  GF + +G + WVP  Y+    +L++HP  LG  ++SV+  +
Sbjct:  141 AFIFSLFLYMKAQVAPVSALAPGGNSGNPIYDFFLGRELNPRICF-FDFKYFCELRPGLIGWVLINLALLMKEAELRGSPSLAMWLVNGFQLLYVGDALWHEEAVLTTMDITHDGFGFMLAFGDMAWVPFTYSLQAQFLLHHPQPLGLPMASVICLI 296          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_NEUCR (Delta(14)-sterol reductase OS=Neurospora crassa GN=erg-3 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.304e-21
Identity = 62/173 (35.84%), Postives = 86/173 (49.71%), Query Frame = 3
Query:   30 TIVYDHLGEIYSALIFGSFIFCIFLYIKGH-LAPSSTD------SGSCGNIIIDFYWGMELYPRIGK----NFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLG 515
            T + D+  +I SA I  +F   IF+Y++   + P + D       G  G++I DFY G EL PRI        DIK F   R G++ W +L   +  KQY     V DS+L  T +   YV      E    +TMDI  D  GF + +G +VWVP +Y++   YL  HP  LG
Sbjct:  154 TFISDNFAQIISANILFAFALAIFVYVRSFDVKPGNKDMRQLAAGGVTGSLIYDFYIGRELNPRITLPLIGQVDIKEFMEMRPGLLGWIILNCAFIAKQYRLYGYVTDSILFITAIQAFYVFDGIYMEPAVLTTMDITTDGFGFMLSFGDVVWVPFMYSTQTRYLSVHPQQLG 326          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: LBR_CHICK (Lamin-B receptor OS=Gallus gallus GN=LBR PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS--TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSM---LVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVL 536
            +YDH  +   +    S    I+LYI+   AP       G+ G ++ DF+ G EL PRIG +FD+K F   R G++ W V+ +   + + + + +   S+   LVN+   L+YV      E    +TMDI HD  GF + +G LVWVP VY+    YLV HP+ +   V++ +
Sbjct:  314 LYDHFVQFAVSAAAFSMALSIYLYIRSLKAPEEDLAPGGNSGYLVYDFFTGHELNPRIG-SFDLKYFCELRPGLIGWVVINLAMLLAEMKIHNQSMPSLSMILVNSF-QLLYVVDALWNEEAVLTTMDITHDGFGFMLAFGDLVWVPFVYSLQAFYLVGHPIAISWPVAAAI 483          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_SCHPO (Delta(14)-sterol reductase OS=Schizosaccharomyces pombe GN=erg24 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 56/162 (34.57%), Postives = 84/162 (51.85%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS-TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEA-NAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLG 515
            ++D+  ++  A    S + C F Y++           G+ GNI+ D++ G  L PRIG NFDIK F   R G++ W V  + +   QY     ++ DSM++  I    YV    + E+   +TMDI  D  G+ + +G LVWVP +Y+    YL  HPV LG
Sbjct:  132 IWDNFLQLMFAAYVFSVVLCTFCYVQSFFGKQQLAKGGTSGNILFDWFIGRSLNPRIG-NFDIKCFCELRPGLILWVVFDIAFACHQYLVLGGRITDSMVLVIIFHTWYVLDSLINESAVLTTMDITTDGFGYMLSFGDLVWVPFLYSLQARYLAFHPVDLG 292          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: LBR_PONAB (Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDS-GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSM---LVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLL 539
            VY H  +   A      +  ++LY++   AP +  S  S GN + DF+ G EL PRIG  FD+K F   R G++ W V+ +   + + +   +   S+   LVN+   L+YV      E    +TMDI HD  GF + +G LVWVP +Y+    YLV+HP  +   ++S+++
Sbjct:  322 VYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPASSGNAVYDFFIGRELNPRIG-TFDLKYFCELRPGLIGWVVINLVMLLAEMKIQDRAVPSLAMILVNSF-QLLYVVDALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNEVSWPMASLII 491          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: LBR_HUMAN (Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 58/172 (33.72%), Postives = 91/172 (52.91%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDS-GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSM---LVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLL 539
            VY H  +   A      +  ++LY++   AP +  S  S GN + DF+ G EL PRIG  FD+K F   R G++ W V+ +   + + +   +   S+   LVN+   L+YV      E    +TMDI HD  GF + +G LVWVP +Y+    YLV+HP  +   ++S+++
Sbjct:  322 VYSHFLQFALAATVFCVVLSVYLYMRSLKAPRNDLSPASSGNAVYDFFIGRELNPRIG-TFDLKYFCELRPGLIGWVVINLVMLLAEMKIQDRAVPSLAMILVNSF-QLLYVVDALWNEEALLTTMDIIHDGFGFMLAFGDLVWVPFIYSFQAFYLVSHPNEVSWPMASLII 491          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_MOUSE (Delta(14)-sterol reductase OS=Mus musculus GN=Tm7sf2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.118e-20
Identity = 53/154 (34.42%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   81 SFIFCIFLYIKGHLAPSST--DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVL 536
            SFIF + LY K  +AP+S     G+ GN + DF+ G EL PR+G +FD K F   R G++ W  + +   +++ E       +M +     L+YV     +E    +TMDI HD  GF + +G L WVP  Y+    +L+ HP  LG  ++ ++
Sbjct:  141 SFIFSLLLYAKALVAPASALAPGGNSGNSMYDFFLGRELNPRLG-SFDFKYFCELRPGLIGWVFINLALLMQEAELRGSPSLAMWLVNGFQLLYVGDALWYEESVLTTMDIIHDGFGFMLVFGDLAWVPFTYSLQAQFLLYHPQPLGLPMALLI 293          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: LBR_MOUSE (Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.385e-19
Identity = 58/172 (33.72%), Postives = 90/172 (52.33%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDS-GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSM---LVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLL 539
            +Y H  ++  A    S +   +LY++   AP    S  S GN + DF+ G EL PR+G  FD+K F   R G++ W V+ +   + + +   +   S+   LVN+   L+YV      E    ++MDI HD  GF + +G LVWVP  Y+    YLV+HP  L   ++SV++
Sbjct:  333 LYTHFLQLALAATGFSVLLSAYLYVRSLRAPREELSPASSGNAVYDFFIGRELNPRLGA-FDLKFFCELRPGLIGWVVINLVMLLMEMKIQERAAPSLAMILVNSF-QLLYVVDALWNEEALLTSMDIMHDGFGFMLAFGDLVWVPFTYSLQAFYLVSHPHDLSWPLASVII 502          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_ASCIM (Delta(14)-sterol reductase OS=Ascobolus immersus GN=ERG3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.029e-19
Identity = 55/164 (33.54%), Postives = 83/164 (50.61%), Query Frame = 3
Query:   42 DHLGEIYSALIFGSFIFCIFLYIKGHLAPSS------TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLG 515
            D+  ++ SA I  S+   +++YI+ +           +  G  GN I DF+ G EL PRIG+  DIK     R G+M W +  + + +KQY  +  V DS+++  +    YV      E+   +TMDI  D  G  + +G  VWVP +Y     YL + PVHLG
Sbjct:  135 DNFAQLQSASIVFSYAMSLWVYIRSYRPMPKGKEVILSPVGFKGNHIHDFWMGRELNPRIGEWLDIKQLHELRPGLMGWILFNLAWTVKQYNTHGFVSDSIVLVNLFETWYVVDALWNESKVLTTMDITTDGLGVMLLFGNAVWVPFMYCLQARYLASFPVHLG 298          
The following BLAST results are available for this feature:
BLAST of CX294348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ERG24_BOVIN1.932e-2135.67Delta(14)-sterol reductase OS=Bos taurus GN=TM7SF2... [more]
ERG24_HUMAN3.296e-2135.67Delta(14)-sterol reductase OS=Homo sapiens GN=TM7S... [more]
ERG24_NEUCR4.304e-2135.84Delta(14)-sterol reductase OS=Neurospora crassa GN... [more]
LBR_CHICK7.342e-2134.30Lamin-B receptor OS=Gallus gallus GN=LBR PE=2 SV=1[more]
ERG24_SCHPO7.342e-2134.57Delta(14)-sterol reductase OS=Schizosaccharomyces ... [more]
LBR_PONAB2.790e-2033.72Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1[more]
LBR_HUMAN2.790e-2033.72Lamin-B receptor OS=Homo sapiens GN=LBR PE=1 SV=2[more]
ERG24_MOUSE8.118e-2034.42Delta(14)-sterol reductase OS=Mus musculus GN=Tm7s... [more]
LBR_MOUSE1.385e-1933.72Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2[more]
ERG24_ASCIM4.029e-1933.54Delta(14)-sterol reductase OS=Ascobolus immersus G... [more]

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Properties
Property NameValue
Genbank descriptionC05015E09SK FlavSen1 Citrus clementina cDNA clone C05015E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294348 ID=CX294348; Name=CX294348; organism=Citrus clementina; type=EST; length=554bp
AATTCGGCACGAGGGGAATATTCAACCCCACCATTGTTTATGATCATCTG
GGAGAAATATATTCGGCACTTATTTTTGGAAGCTTCATCTTTTGTATTTT
CTTATATATTAAAGGTCACTTGGCCCCATCTTCCACTGATTCTGGTTCAT
GTGGAAACATAATAATTGACTTCTACTGGGGTATGGAGCTGTATCCTCGA
ATTGGCAAGAACTTTGACATCAAAGTATTCACAAACTGCAGATTTGGGAT
GATGTCTTGGGCTGTTCTCGCTGTCACTTATTGTATTAAGCAGTATGAAG
CAAATGCAAAAGTCGAAGATTCCATGCTTGTAAATACTATATTGATGCTG
ATTTATGTTACAAAATTCTTCTTGTGGGAAGCTGGTTACTGGAGCACAAT
GGACATTGCTCATGATCGAGCTGGGTTTTATATTTGTTGGGGATGCTTGG
TATGGGTTCCTTCTGTGTATACATCTCCTGGCATGTACCTAGTTAACCAT
CCTGTGCATCTTGGCACTCAAGTAAGTAGTGTCCTGTTATTTGTTGTTCA
TCAA
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