CX294348

Overview
NameCX294348
Unique NameCX294348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_FUSSO (Delta(14)-sterol reductase OS=Fusarium solani subsp. pisi PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.531e-18
Identity = 56/184 (30.43%), Postives = 93/184 (50.54%), Query Frame = 3
Query:   30 TIVYDHLGEIYSALIFGSFIFCIFLYIKGH-LAPSSTDS------GSCGNIIIDFYWGMELYPRIG----KNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFVV 548
            T + D+  +I +A    S+    F+Y++   + P + ++      G  GN++ D++ G EL PR+        D+K +   R GMM W +   ++C +QY     V DS +  T++  +YV   +  E    +TMDI  D  G  + +G +VWVP VY+    YL  HPV LG    +V+L ++
Sbjct:  149 TFISDNFIQILTANTIFSYAVATFVYVRSFSVKPGNKENRELAAGGHTGNMLYDWFIGRELNPRVVIPLIGEVDLKEWLELRPGMMGWIIFNCSWCAQQYRNYGYVTDSSICITLVQAVYVFDSWWNEPAILTTMDITTDGFGMMLAFGDIVWVPFVYSLQTRYLAVHPVSLGPVGLAVMLSLI 332          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_SEPLY (Delta(14)-sterol reductase OS=Septoria lycopersici GN=ERG3 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.432e-17
Identity = 59/192 (30.73%), Postives = 92/192 (47.92%), Query Frame = 3
Query:   54 EIYSALIFGSFIFCIFLYIKG-HLAPSSTDS------GSCGNIIIDFYWGMELYPRIGKNF----DIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILML-----------------IYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            ++ +  I  ++   I++Y+K   +   +T+       G  G+I+ D+Y G EL PRI   F    DIK F   R GM+ W +L + +  KQY++   + DSM   T L+L                 +YV      E    +TMD+  D  GF + +G LVWVP +Y+    YL  HPV LG    +++L +
Sbjct:  174 QLLTVNIIIAYALAIYVYLKSFEVKAGNTEQRELAAGGHSGHILYDWYMGRELNPRITIPFIGEVDIKSFMELRPGMIGWVLLDLAFAAKQYKSYGYITDSMRKWTPLLLGIHVLTIHPVIVIISQSVYVFDALYMEPAILTTMDLTTDGFGFMLSFGDLVWVPFIYSIQAKYLSVHPVALGPLYVALILTI 365          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_ARATH (Delta(14)-sterol reductase OS=Arabidopsis thaliana GN=FK PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.444e-16
Identity = 58/190 (30.53%), Postives = 104/190 (54.74%), Query Frame = 3
Query:   15 GIFNPTIVYDHLGEIYSALIFGSFIFCIF----LYIKGHLAPSSTDSGSC------GNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQ--VSSVLLFVV 548
            GI +P +V D   E+ SA    +FIFC+     LY+ G    SS++ GS       GN++ D+++G++L P+   + D+K F   R GMM W ++ ++   K  + +  +  SM++  I   +Y+  +F+ E    ST DI  +R GF + +G L+W+P  ++  G +L+++ V L     V + L+F++
Sbjct:   74 GIVSPLVVADRGLELLSA----TFIFCVLVTLALYVTGR---SSSNKGSSLKPHVSGNLVHDWWFGIQLNPQF-MSIDLKFFF-VRAGMMGWLLINLSILAKSVQ-DGSLSQSMILYQIFCALYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLLWIPFTFSIQGWWLLHNKVELTVPAIVVNCLVFLI 253          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_DICDI (Delta(14)-sterol reductase OS=Dictyostelium discoideum GN=erg24 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.169e-16
Identity = 47/165 (28.48%), Postives = 80/165 (48.48%), Query Frame = 3
Query:   15 GIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVH 509
            G+F  TI+ D+   + + +   SF+F   L I  H      +    G+   DF+ G    PRIG +FD+K+F   R G++ W ++  +   KQ E   ++  S+++       Y+  ++  E    +TMDI  ++ G+ + +G L WVP  Y     YL  H V+
Sbjct:  161 GLFKATILIDNYAPMMTVVNIWSFVFTFLLKI--HAKLKGEEERMSGHFFYDFWMGFARNPRIG-SFDLKLFCEARPGLILWVLMNFSIAAKQLEVYGEISLSVILVCCFHFWYIADYYYHEEAILTTMDIITEKFGYMLVYGDLSWVPFTYCFQCYYLYKHLVN 322          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ERG24_YEAST (Delta(14)-sterol reductase OS=Saccharomyces cerevisiae GN=ERG24 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.988e-14
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  144 GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLG 515
            G+ GNII D++ G EL PR+G   DIK+F+  R GM+ W ++ ++     Y    K+ D++++   L   Y+    L E G  + MDI  D  GF + +G L  VP  Y+    YL   PV LG
Sbjct:  188 GNSGNIIYDWFIGRELNPRLGP-LDIKMFSELRPGMLLWLLINLSCLHHHYLKTGKINDALVLVNFLQGFYIFDGVLNEEGVLTMMDITTDGFGFMLAFGDLSLVPFTYSLQARYLSVSPVELG 310          
The following BLAST results are available for this feature:
BLAST of CX294348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ERG24_FUSSO1.531e-1830.43Delta(14)-sterol reductase OS=Fusarium solani subs... [more]
ERG24_SEPLY6.432e-1730.73Delta(14)-sterol reductase OS=Septoria lycopersici... [more]
ERG24_ARATH2.444e-1630.53Delta(14)-sterol reductase OS=Arabidopsis thaliana... [more]
ERG24_DICDI4.169e-1628.48Delta(14)-sterol reductase OS=Dictyostelium discoi... [more]
ERG24_YEAST2.988e-1436.29Delta(14)-sterol reductase OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC05015E09SK FlavSen1 Citrus clementina cDNA clone C05015E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294348 ID=CX294348; Name=CX294348; organism=Citrus clementina; type=EST; length=554bp
AATTCGGCACGAGGGGAATATTCAACCCCACCATTGTTTATGATCATCTG
GGAGAAATATATTCGGCACTTATTTTTGGAAGCTTCATCTTTTGTATTTT
CTTATATATTAAAGGTCACTTGGCCCCATCTTCCACTGATTCTGGTTCAT
GTGGAAACATAATAATTGACTTCTACTGGGGTATGGAGCTGTATCCTCGA
ATTGGCAAGAACTTTGACATCAAAGTATTCACAAACTGCAGATTTGGGAT
GATGTCTTGGGCTGTTCTCGCTGTCACTTATTGTATTAAGCAGTATGAAG
CAAATGCAAAAGTCGAAGATTCCATGCTTGTAAATACTATATTGATGCTG
ATTTATGTTACAAAATTCTTCTTGTGGGAAGCTGGTTACTGGAGCACAAT
GGACATTGCTCATGATCGAGCTGGGTTTTATATTTGTTGGGGATGCTTGG
TATGGGTTCCTTCTGTGTATACATCTCCTGGCATGTACCTAGTTAACCAT
CCTGTGCATCTTGGCACTCAAGTAAGTAGTGTCCTGTTATTTGTTGTTCA
TCAA
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