CX294355

Overview
NameCX294355
Unique NameCX294355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.157e-25
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP-------------------LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKK 424
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK+I RRKP H H+ Q   P                     E  +   E ++ERLK++ +                +  +Q + +RL+ +E RQ QM++ LA  + +PGF +   QQ    +K+
Sbjct:   90 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKR 246          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.041e-25
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP-------------------LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKK 424
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK+I RRKP H H+ Q   P                     E  +   E ++ERLK++ +                +  +Q + +RL+ +E RQ QM++ LA  +  PGF +   QQ    +K+
Sbjct:   92 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQRLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKR 248          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA1B_ARATH (Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.791e-24
Identity = 63/157 (40.13%), Postives = 90/157 (57.32%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPL--------TETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSAL--------NQQAEVHSKKRRL 433
            SFVRQLNTYGFRK+DPD+WEFANE F+RG++ LLK+I RRKP H    Q  T +         E  +   E ++ERLK++ +                E  +Q+V ++++ +E RQ QM++ LA  ++ PGF + L        N+Q    +KKRRL
Sbjct:   78 SFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRL 234          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 3.991e-24
Identity = 61/158 (38.61%), Postives = 90/158 (56.96%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVH---------SHS---TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTT 448
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLL++I RRKP H          HS     S +   E  +   E ++ERLK++ +                +  +Q++ +RL+ +ENRQ Q+++ LA  ++ P F S   QQ    ++  R +  T+
Sbjct:   88 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTS 245          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA3_ARATH (Heat stress transcription factor A-3 OS=Arabidopsis thaliana GN=HSFA3 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.517e-23
Identity = 59/129 (45.74%), Postives = 78/129 (60.47%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST-QSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSAL 394
            SFVRQLNTYGFRKID D+WEFANE F+RG++HLLKNIHRR+   S+ T  S T  ++    E   +IE+L+KE              +     HV +V +RL+  E RQ Q+++ LA L +  GF   L
Sbjct:  106 SFVRQLNTYGFRKIDTDKWEFANEAFLRGKKHLLKNIHRRRSPQSNQTCCSSTSQSQGSPTEVGGEIEKLRKERRALMEEMVELQQQSRGTARHVDTVNQRLKAAEQRQKQLLSFLAKLFQNRGFLERL 234          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.412e-23
Identity = 61/148 (41.22%), Postives = 87/148 (58.78%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSH-STQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVH-------SKKRR 430
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK+I RRKP +S  S QS     E     +E +I++LK++                  +  +Q++ ++L+  E +Q  M+A L+ ++  P F   L  Q+E+        SKKRR
Sbjct:   89 SFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRKPPNSSPSQQSLGSFLEVGHFGYEGEIDQLKRDKHLLMAEVVKLRQEQQNTKSDLQAMEQKLQGTEQKQQHMMAFLSRVMHNPEFIRQLFSQSEMRKELEEFVSKKRR 236          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA2_ARATH (Heat stress transcription factor A-2 OS=Arabidopsis thaliana GN=HSFA2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.284e-22
Identity = 60/145 (41.38%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPV---HSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLL 436
            SF+RQLNTYGFRKIDPD+WEFANE F+ GQ+HLLKNI RR+ +   + +   S     E  +  F+ ++ERLK+++              H  +  V ++ +RL   E RQ QM+  LA  L  P F     QQ  V SK+++ L
Sbjct:   95 SFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRNMGLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNNPNFV----QQFAVMSKEKKSL 235          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.860e-22
Identity = 65/186 (34.95%), Postives = 96/186 (51.61%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTP-----------------LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQ---AEVH----SKKRRLLRPTTIEYFDDVKSASLSVNE 496
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK I RRK V  H + S  P                   E  +   E ++E+LK++ +                +  +Q + + L+ +E RQ Q+++ LA  ++ P F S   Q+   + +H    +KKRRL   +T     +  S SL  ++
Sbjct:  103 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSHSHSLEASD 288          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.372e-22
Identity = 64/174 (36.78%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVH--SHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQ-------AEVHSKKRR-------LLRPTTIEYFDDVKSASL 484
            SFVRQLNTYGFRKIDPD+WEFAN+ F+RGQRHLLK I RR+P+     S Q+     E  +   + +I+RLK++ +                + +++++ ERL++ E +Q QM+  LA  ++ P F   L  Q        +  SKKR         L P  +   D ++S  L
Sbjct:   88 SFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRRPLSYLPGSQQALGTCLEVGQFGLDEEIDRLKRDKNILLAEVVKLRHKQQSTKANMRAMEERLQHAEQKQVQMMGFLARAMQNPDFFHQLIHQQDKMKGLEDTFSKKRTRSIDIVPFLNPGEVSQGDQLESTLL 261          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFC1_ARATH (Heat stress transcription factor C-1 OS=Arabidopsis thaliana GN=HSFC1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.854e-21
Identity = 70/186 (37.63%), Postives = 92/186 (49.46%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGF-------SSALNQQAEVHSKKRRLLRPTTIEYFDDVKSASLSVNEQKE---NPDATSDPSPA 538
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLL NI RRK       Q      + E  E   +IERLK+E                E E  +Q +  R+   E R  QM+A L  +++ P              QQ +V  KK+R +  +T      VKS    V E +       ++S PSP+
Sbjct:   68 SFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKHARGMYGQ------DLEDGEIVREIERLKEE--------------QRELEAEIQRMNRRIEATEKRPEQMMAFLYKVVEDPDLLPRMMLEKERTKQQQQVSDKKKRRVTMST------VKSEEEEVEEDEGRVFRVMSSSTPSPS 227          
The following BLAST results are available for this feature:
BLAST of CX294355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HSF8_SOLLC6.157e-2538.85Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HSF8_SOLPE8.041e-2538.85Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HFA1B_ARATH1.791e-2440.13Heat stress transcription factor A-1b OS=Arabidops... [more]
HFA1D_ARATH3.991e-2438.61Heat stress transcription factor A-1d OS=Arabidops... [more]
HSFA3_ARATH1.517e-2345.74Heat stress transcription factor A-3 OS=Arabidopsi... [more]
HFA2E_ORYSJ4.412e-2341.22Heat stress transcription factor A-2e OS=Oryza sat... [more]
HSFA2_ARATH1.284e-2241.38Heat stress transcription factor A-2 OS=Arabidopsi... [more]
HFA1A_ARATH2.860e-2234.95Heat stress transcription factor A-1a OS=Arabidops... [more]
HFA2D_ORYSJ6.372e-2236.78Heat stress transcription factor A-2d OS=Oryza sat... [more]
HSFC1_ARATH1.854e-2137.63Heat stress transcription factor C-1 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015F06SK FlavSen1 Citrus clementina cDNA clone C05015F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294355 ID=CX294355; Name=CX294355; organism=Citrus clementina; type=EST; length=546bp
GGCTGCAGGCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGA
TTGATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAG
AGGCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTC
CACGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGG
CCAAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTG
CGGAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGT
ACGCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCGCCT
GTTTAGCTAACCTGTTGAAGAAACCGGGATTTTCCTCGGCTCTTAATCAA
CAAGCAGAAGTTCACAGCAAAAAGAGAAGGCTGTTGAGGCCTACGACTAT
TGAATACTTTGATGATGTAAAATCCGCAAGCCTAAGTGTGAATGAACAGA
AAGAGAACCCAGATGCTACTTCTGATCCATCTCCGGCGTTGAATTT
back to top