CX294358

Overview
NameCX294358
Unique NameCX294358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  262 SQVDILDDGYRWRKYGQKVVKNSKFPRSYYKC-THKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            +Q ++  D + WRKYGQK +K S +PR+YY+C + KGC  +KQV+R+  D  I + TY G HTHP
Sbjct:  159 TQENLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHP 223          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK54_ARATH (Probable WRKY transcription factor 54 OS=Arabidopsis thaliana GN=WRKY54 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.901e-13
Identity = 37/76 (48.68%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  244 YAFQTRSQVDILD-----DGYRWRKYGQKVVKNSKFPRSYYKCTHK---GCNVKKQVQRNTKDEEIVVTTYEGLHT 447
            Y  +TRS   I++     D Y WRKYGQK + N+ FPRSY +CTHK   GC   KQVQ+  +D E+   TY G HT
Sbjct:  135 YTRKTRSHARIVEAKSSEDRYAWRKYGQKEILNTTFPRSYLRCTHKPTQGCKATKQVQKQDQDSEMFQITYIGYHT 210          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK30_ARATH (Probable WRKY transcription factor 30 OS=Arabidopsis thaliana GN=WRKY30 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 1
Query:  148 QLYSGGASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTR----SQVD-ILDDGYRWRKYGQKVVKNSKFPRSYYKCTHK---GCNVKKQVQRNTKDEEIVVTTYEGLHT 447
            Q+  GG  G+  SD + Q             R++ + R    + VD  LDDG+ WRKYGQK +  +KFPR YY+CT++   GC   KQVQR+ +++ ++  +Y G+H+
Sbjct:   66 QVSQGG--GSPKSDDSDQEPLVIKSSKKSMPRWSSKVRIAPGAGVDRTLDDGFSWRKYGQKDILGAKFPRGYYRCTYRKSQGCEATKQVQRSDENQMLLEISYRGIHS 171          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.537e-12
Identity = 31/62 (50.00%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  271 DILDDGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            DI  D Y WRKYGQK +K S +PR YYKC+  +GC  +K V+R  +D  +++ TYE  H HP
Sbjct:  310 DIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVERCLEDPAMLIVTYEAEHNHP 371          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
Query:  247 AFQTRSQVDIL-DDGYRWRKYGQKVVKNSKFPRSYYKC-THKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            A  +RS  +++  D + WRKYGQK +K S FPR YY+C + KGC+ +KQV+R+  D  ++V TY   H HP
Sbjct:  205 AMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHP 275          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK70_ARATH (Probable WRKY transcription factor 70 OS=Arabidopsis thaliana GN=WRKY70 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 36/82 (43.90%), Postives = 49/82 (59.76%), Query Frame = 1
Query:  274 ILDDGYRWRKYGQKVVKNSKFPRSYYKCTHK---GCNVKKQVQRNTKDEEIVVTTYEGLHT------HPIGKITDSFEQILL 492
            IL+D + WRKYGQK + N+KFPRSY++CTHK   GC   KQVQ+   + ++   TY G HT       P  K  D  ++I +
Sbjct:  118 ILEDAFSWRKYGQKEILNAKFPRSYFRCTHKYTQGCKATKQVQKVELEPKMFSITYIGNHTCNTNAETPKSKTCDHHDEIFM 199          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:  283 DGYRWRKYGQKVVKNSKFPRSYYKCTHK-GCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            DGY+WRKYGQK+ +++  PR+Y++C+    C VKK+VQR+ +D   +V TYEG H H
Sbjct:  147 DGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNH 203          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 1
Query:   67 QSRFSASHSSLNMGIDPRAQ*HAVSEFQLYSGGASGTSGSDKAKQSXXXXXXXXXXXXRYAFQTRSQVDILD-DGYRWRKYGQKVVKNSKFPRSYYKC-THKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            Q    +S S +N   +PR   +      L     S +SGS  +K S            ++        + L+ D + WRKYGQK +K S +PR YY+C T KGC  +KQV+RN  D ++ + TY   H HP
Sbjct:   61 QESVVSSFSCINYPEEPRKPQNQKRPLSL-----SASSGSVTSKPSGSNTSRSKRRKIQHKKVCHVAAEALNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHP 186          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1
Query:  283 DGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            DG++WRKYGQKV +++  PR+Y++C+    C VKK+VQR+ +D  ++V TYEG H H
Sbjct:  177 DGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK17_ARATH (Probable WRKY transcription factor 17 OS=Arabidopsis thaliana GN=WRKY17 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.425e-12
Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  271 DILDDGYRWRKYGQKVVKNSKFPRSYYKC-THKGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            DI  D Y WRKYGQK +K S  PR YYKC T +GC  +K V+R   D  +++ TYEG H H
Sbjct:  240 DIPPDEYSWRKYGQKPIKGSPHPRGYYKCSTFRGCPARKHVERALDDSTMLIVTYEGEHRH 300          
The following BLAST results are available for this feature:
BLAST of CX294358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WRK27_ARATH4.046e-1349.23Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK54_ARATH6.901e-1348.68Probable WRKY transcription factor 54 OS=Arabidops... [more]
WRK30_ARATH1.537e-1237.04Probable WRKY transcription factor 30 OS=Arabidops... [more]
WRK21_ARATH1.537e-1250.00Probable WRKY transcription factor 21 OS=Arabidops... [more]
WRK14_ARATH2.008e-1246.48Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK70_ARATH2.622e-1243.90Probable WRKY transcription factor 70 OS=Arabidops... [more]
WRK60_ARATH2.622e-1250.88Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK22_ARATH2.622e-1233.59WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK18_ARATH3.425e-1250.88WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK17_ARATH3.425e-1252.46Probable WRKY transcription factor 17 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05015F09SK FlavSen1 Citrus clementina cDNA clone C05015F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294358 ID=CX294358; Name=CX294358; organism=Citrus clementina; type=EST; length=606bp
TTTTAATTATTGTGCTTCTGCTTGATGGTAGTGGTAGAGCAGTCCCATAT
GGACAACTCCCATTTACAGTCAAGATTTTCAGCTTCTCATTCCTCATTGA
ACATGGGAATTGATCCCCGTGCACAATAACATGCTGTATCTGAATTTCAA
CTTTACTCAGGTGGTGCTAGTGGAACCTCTGGGAGTGATAAGGCGAAACA
ATCTGGAAAGAAAGGAGACCACAAAGGGACCAAAAAGCACAGATATGCTT
TTCAAACGAGAAGCCAGGTTGACATACTTGATGACGGTTATAGATGGAGG
AAATATGGACAAAAGGTTGTAAAGAACAGCAAGTTCCCCAGGAGTTACTA
CAAATGTACTCACAAAGGGTGCAATGTGAAAAAGCAAGTCCAACGCAATA
CAAAAGATGAAGAGATTGTGGTGACAACCTATGAAGGACTGCATACACAT
CCAATTGGGAAGATCACCGACAGCTTTGAACAGATCCTGCTGAAAGCATG
TACCACTTCGTAATTTGAAAGCTGTCGCCATTGATCCTCATTTCAAGAGT
GTTATGTGCCAGTGTTTGATGTATATGCCATTTATTATTGCTGACTTTCA
TTATCA
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