CX294358

Overview
NameCX294358
Unique NameCX294358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length606
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK39_ARATH (Probable WRKY transcription factor 39 OS=Arabidopsis thaliana GN=WRKY39 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.899e-11
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  271 DILDDGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            DI  D Y WRKYGQK +K S  PR YYKC+  +GC  +K V+R   +  +++ TYEG H H
Sbjct:  259 DIPPDEYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCIDETSMLIVTYEGEHNH 319          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  271 DILDDGYRWRKYGQKVVKNSKFPRSYYKCTH-KGCNVKKQVQRNTKDEEIVVTTYEGLHTH 450
            DI  D + WRKYGQK +K S  PR YYKC+  +GC  +K V+R   D  +++ TYEG H H
Sbjct:  329 DIPADEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERCVDDPSMLIVTYEGDHNH 389          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:  277 LDDGYRWRKYGQKVVKNSKFPRSYYKCT-HKGCNVKKQVQRNTKDE-EIVVTTYEGLHTHPI 456
            ++DG +WRKYGQK  K +  PR+YY+C+    C V+KQVQR  ++E    +TTYEG H HP+
Sbjct:  202 INDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPL 263          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  283 DGYRWRKYGQKVVKNSKFPRSYYKC-THKGCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            D + WRKYGQK +K+S +PRSYY+C + KGC  +KQV+R+  D  + V TY   H HP
Sbjct: 1181 DLWVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHP 1238          
BLAST of CX294358 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  268 VDILDDG--YRWRKYGQKVVKNSKFPRSYYKCTHK---GCNVKKQVQRNTKDEEIVVTTYEGLHTHP 453
            +  +D+G  + WRKYGQK +  S+FPR YY+C +K   GC   KQVQR+  D  ++  TY   H HP
Sbjct: 1202 IPAIDEGDLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNHP 1268          
The following BLAST results are available for this feature:
BLAST of CX294358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
WRK39_ARATH2.899e-1149.18Probable WRKY transcription factor 39 OS=Arabidops... [more]
WRKY1_MAIZE3.787e-1149.18Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK36_ARATH3.787e-1150.00Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRK16_ARATH4.945e-1151.72Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK52_ARATH8.435e-1144.78Probable WRKY transcription factor 52 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05015F09SK FlavSen1 Citrus clementina cDNA clone C05015F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294358 ID=CX294358; Name=CX294358; organism=Citrus clementina; type=EST; length=606bp
TTTTAATTATTGTGCTTCTGCTTGATGGTAGTGGTAGAGCAGTCCCATAT
GGACAACTCCCATTTACAGTCAAGATTTTCAGCTTCTCATTCCTCATTGA
ACATGGGAATTGATCCCCGTGCACAATAACATGCTGTATCTGAATTTCAA
CTTTACTCAGGTGGTGCTAGTGGAACCTCTGGGAGTGATAAGGCGAAACA
ATCTGGAAAGAAAGGAGACCACAAAGGGACCAAAAAGCACAGATATGCTT
TTCAAACGAGAAGCCAGGTTGACATACTTGATGACGGTTATAGATGGAGG
AAATATGGACAAAAGGTTGTAAAGAACAGCAAGTTCCCCAGGAGTTACTA
CAAATGTACTCACAAAGGGTGCAATGTGAAAAAGCAAGTCCAACGCAATA
CAAAAGATGAAGAGATTGTGGTGACAACCTATGAAGGACTGCATACACAT
CCAATTGGGAAGATCACCGACAGCTTTGAACAGATCCTGCTGAAAGCATG
TACCACTTCGTAATTTGAAAGCTGTCGCCATTGATCCTCATTTCAAGAGT
GTTATGTGCCAGTGTTTGATGTATATGCCATTTATTATTGCTGACTTTCA
TTATCA
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