CX294359

Overview
NameCX294359
Unique NameCX294359
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length584
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig872 contig Ccv1_Contig872:37..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.549e-32
Identity = 80/150 (53.33%), Postives = 102/150 (68.00%), Query Frame = 3
Query:   72 RRTNVLYPVSLYVW---DPFHWFLSSAVTNAPSSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEE--KND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKKPEVRLL 503
            R  NVL P+S+  W   DPF      AV    S A     + N  +DW ETP A VF ADLPG+ K++  VEV+ G +L ISGER++E++   KND +WH VERSSGKF RRFRLP  A+V+QV ASM+NGVLTVTVPK+E KKP+++ +
Sbjct:    5 RSGNVLDPMSVDFWADADPF-----GAVR---SLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAI 146          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 67/148 (45.27%), Postives = 102/148 (68.92%), Query Frame = 3
Query:   66 GGRRTNVLYPVSLYVWDPFHWFLS-SAVTNAPSSATETSHV-ANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKKPEVRLL 503
            GG     + PVS+ + +PF   +S +A   APS+A   + V + A +DW ET  A VF AD+PG+ +EE+ VEV+  ++L+ISG+R++  EEK ++WHRVERSS +F+R  RLP NA  + V A+++NGVLT+T+PK  ++KP  R++
Sbjct:   26 GGGGGGEIEPVSVDIMEPFMDAISLTAFAAAPSAAAAAAGVPSTASMDWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVLTITIPKDNDRKPHARII 173          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.228e-26
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 3
Query:  198 IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKKPEVRLLRSLASD 521
            +DW ETP+  V   D+PGL +EE+ VEV+  R+L++SGER KE+E+K D WHRVERS GKF R+FRLP N  ++ VKA +ENGVLT+T+ K    K +   + S+A +
Sbjct:   69 VDWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLDKLSPGKIKGPRVVSIAGE 176          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.910e-26
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = 3
Query:  294 ILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKKPEVRLL 503
            ILQISGER+ E+E+KND WHRVERSSGKF+R FRLPDNAKV+QVKASMENGVLTVTVPK+E KKP+V+ +
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAI 70          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.964e-26
Identity = 52/101 (51.49%), Postives = 75/101 (74.26%), Query Frame = 3
Query:  183 VANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKK 485
            +++A +DW ETP+  V   D+PGL K+++ +EV+  R+L++SGER KE+++K D WHRVERS GKF R+F+LP N  ++ VKA MENGVLT+T+ K    K
Sbjct:   72 LSHARVDWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTLHKLSHDK 172          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.597e-24
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:  198 IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPK---QEEKKPEVRLLRSLASDTVMFSDS 542
            +DW ET +      D+PGL K+E+ +EV+   +L++SGER +E+E+K D+WHRVERS GKF R+F+LPDN  +E VKA +ENGVLT+ + K   ++ K P V  + +    T   S S
Sbjct:   73 VDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVLTINLTKLSPEKVKGPRVVNIAAEEDQTAKISSS 190          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.646e-24
Identity = 64/130 (49.23%), Postives = 88/130 (67.69%), Query Frame = 3
Query:  111 WDPFHWFLSSAVTNAPSSATETSHVANA*IDWIETPQARVFKADLP-GLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPK-QEEKKPEV 494
            W+PF  F ++   +A   A++TS  AN  I+  ET +A VF+ADLP G+ KEE+ VEVD G +L I+GERS  +EEK  + H +ERS   F  RF LPD+A V+ V+ASM+ G+LTVTVPK   +K+P +
Sbjct:   15 WNPFSIFGTTVAADA-WLASDTSAFANTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGMLTVTVPKVVTDKQPAI 143          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  153 APSSATETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*G-RILQISGER-----SKEQEEKND--KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPK 470
            A ++A E + VA A  DW ETP+A V   D+PG+ + ++ VEVD   R+L++SGER     ++E+E + D  +WHR ER++G+F RRFR+P  A V +V A +++GVLTVTVPK
Sbjct:   59 AAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVLTVTVPK 172          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.116e-20
Identity = 48/105 (45.71%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  186 ANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQEEKNDKWHRVERSS-----GKFLRRFRLPDNAKVEQVKASMENGVLTVTVPKQEEKK 485
            + A IDW+E+  + +FK ++PG  KE++ V+++ G +L I GE  KE++++N  WH  ER +      +FLRR  LP+N KV+QVKA +ENGVLTV VPK    K
Sbjct:   20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVLTVVVPKDTSSK 124          
BLAST of CX294359 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 9.067e-20
Identity = 55/124 (44.35%), Postives = 78/124 (62.90%), Query Frame = 3
Query:  171 ETSHVANA*IDWIETPQARVFKADLPGLMKEELYVEVD*GRILQISGERSKEQ--EEKN--DKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTVPK---QEEKKPEVRLLRSLASD 521
            + + ++ A +DW ET  A     D+PG+ KE+L VEV+  R+L+ISGER +E+  E+K   D WHR ERS G+F R+ RLPDNA ++ + AS++NGVLTV   K    + K P V  + S   D
Sbjct:   69 DVAMLSMARVDWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVLTVRFRKLAPDQIKGPRVVGIASAGGD 192          
The following BLAST results are available for this feature:
BLAST of CX294359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
HS166_ORYSJ3.549e-3253.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS189_ORYSJ1.947e-3045.2718.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_SOYBN2.228e-2651.8522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP12_SOYBN2.910e-2680.00Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_PEA4.964e-2651.4922.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP22_ARATH1.597e-2445.7622.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS17B_ORYSJ4.646e-2449.2317.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS219_ORYSJ3.116e-2047.3721.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH3.116e-2045.7115.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HS232_ORYSJ9.067e-2044.3523.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionC05015F10SK FlavSen1 Citrus clementina cDNA clone C05015F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294359 ID=CX294359; Name=CX294359; organism=Citrus clementina; type=EST; length=584bp
GAAGTTGTTGAGCATTTAATTACCGTGCCCACTTTGCCATAATGTCACTC
ATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGCTCTATCCAGTTTC
ATTATATGTATGGGATCCTTTCCACTGGTTCTTGTCCTCGGCCGTTACCA
ACGCGCCGTCTTCTGCTACGGAAACATCCCATGTCGCCAATGCTTGAATT
GACTGGATAGAGACTCCTCAGGCTCGCGTATTCAAAGCTGATCTTCCAGG
GCTGATGAAAGAAGAATTATACGTTGAGGTTGATTAGGGCAGGATTCTGC
AAATAAGCGGAGAGAGGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGG
CATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCC
CGACAATGCTAAGGTGGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGC
TCACAGTCACCGTTCCTAAACAGGAGGAGAAGAAACCTGAAGTAAGGCTA
TTGAGATCTCTGGCTAGTGATACTGTAATGTTTTCAGATAGTGTCTTTGT
TGCTATAATTTGTACGAAGCAAGCCCTGGTGTTG
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