CX294360

Overview
NameCX294360
Unique NameCX294360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 8.444e-34
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 63/102 (61.76%), Postives = 77/102 (75.49%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+A VF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.457e-33
Identity = 63/102 (61.76%), Postives = 78/102 (76.47%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +NGR K GRGHV+P+RC+NC+RC PKDKAIK+F IRN+VE+AA+RDIS+ASVF  Y +PK+Y++L YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHSKVVRNRSREARKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_OCTVU (40S ribosomal protein S26 OS=Octopus vulgaris GN=RPS26 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.032e-31
Identity = 63/102 (61.76%), Postives = 75/102 (73.53%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M  KR +NGR K GRGHVK +RC+NC+RC PKDKAIK+F IRN+VE+AA+RDISDASV+  Y++PK+Y KL YCVSCAIH KIV            PP R R
Sbjct:    1 MTSKRRNNGRGKKGRGHVKYIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHSKIVRNRSREARKDRTPPIRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_DROME (40S ribosomal protein S26 OS=Drosophila melanogaster GN=RpS26 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.761e-31
Identity = 63/106 (59.43%), Postives = 78/106 (73.58%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M KKR + GRNK+ RGHVKPVRC+NC+RC PKDKAIK+F IRN+VE+AA+RDI++AS++  Y +PK+Y KL YCVSCAIH K+V            PP R  F KD
Sbjct:    1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLR-SFPKD 105          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_ANOGA (40S ribosomal protein S26 OS=Anopheles gambiae GN=RpS26 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.003e-31
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M KKR + GR K+ RGHVK VRC+NC+RC PKDKAIK+F IRN+VE+AA+RDISDASV++ Y +PK+Y KL YCVSCAIH K+V            PP R  F KD
Sbjct:    1 MTKKRRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQR-SFPKD 105          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.922e-31
Identity = 60/106 (56.60%), Postives = 74/106 (69.81%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M  KR + GRNK+ RGHVKP+RCSNC +C PKDKAIKRF +RN+VE AAIRD+ +ASV+  Y++PK+Y K QYCVSCAIH  +V            PPPR    K+
Sbjct:    1 MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKE 106          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.123e-31
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVR 365
            M KKR +N   K GRGHV+P+RC+NC RC P DKAIK+F IRN+VE+AA+RDIS+ SVF  Y +PK+Y+KL YCVSCAIH K+V            PPPR R
Sbjct:    1 MTKKRRNNSHAKKGRGHVQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHSKVVRNRSREACKDRTPPPRFR 102          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.490e-30
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M  KR + GRNK+ RGHV P+RCSNC +C PKDKAIKRF +RN+VE AAIRD+ +ASV+  Y++PK+Y K QYCVSCAIH  +V            PPPR    K+
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKE 106          
The following BLAST results are available for this feature:
BLAST of CX294360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_HUMAN8.444e-3462.7540S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
RS26_BOVIN8.444e-3462.7540S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_SHEEP2.457e-3361.7640S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_CRICR2.457e-3361.7640S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]
RS26_OCTVU1.032e-3161.7640S ribosomal protein S26 OS=Octopus vulgaris GN=R... [more]
RS26_DROME1.761e-3159.4340S ribosomal protein S26 OS=Drosophila melanogast... [more]
RS26_ANOGA3.003e-3160.3840S ribosomal protein S26 OS=Anopheles gambiae GN=... [more]
RS263_ARATH3.922e-3156.6040S ribosomal protein S26-3 OS=Arabidopsis thalian... [more]
RS26L_HUMAN5.123e-3158.82Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS262_ARATH1.490e-3055.6640S ribosomal protein S26-2 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC05015F11SK FlavSen1 Citrus clementina cDNA clone C05015F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294360 ID=CX294360; Name=CX294360; organism=Citrus clementina; type=EST; length=518bp
ACTCGAGCAGTTTCAGCAGGTCACATACCCGCTGATTTTACTCGTCGCAA
GTCGCAAAGATGGTCAAGAAGAGAGCGTCCAACGGCCGCAACAAGAACGG
CAGGGGCCACGTCAAGCCTGTCCGTTGCTCCAACTGCTCGCGATGCACCC
CCAAGGACAAGGCCATCAAGAGATTCACCATCCGCAACATGGTTGAGTCC
GCCGCCATCCGTGACATCTCTGACGCCTCTGTCTTCGCTGAGTACTCTGT
CCCCAAGATGTACCTCAAGCTCCAGTACTGCGTTTCTTGCGCCATCCACG
GCAAGATCGTCCGTGTCCGTTCCCGCGAGGGCCGCCGTAACCGCGCTCCC
CCTCCTCGCGTGCGCTTCAACAAGGACGGCTAGAAGATCAACCCTCTTCA
GTCCGGCAAGGTCGCTGGCGCCCAGGCTTAAGCACGTCGCATGACCGAGA
AGATAACCTCAGACGAAGTTCGATTTTCATGCATCACGGCGAACAAGGAA
ATTATGGGGCGTCTGTCT
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