CX294360

Overview
NameCX294360
Unique NameCX294360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.490e-30
Identity = 59/106 (55.66%), Postives = 73/106 (68.87%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M  KR + GRNK+ RGHV P+RCSNC +C PKDKAIKRF +RN+VE AAIRD+ +ASV+  Y++PK+Y K QYCVSCAIH  +V            PPPR    K+
Sbjct:    1 MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKE 106          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.648e-29
Identity = 54/83 (65.06%), Postives = 69/83 (83.13%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKI 308
            M  KR ++GRNK GRGHV+P+RC+NC RC PKDKAIK+F +RN+V +AA+RDISDAS +  Y++PK+Y KL YCVSCAIH K+
Sbjct:    1 MTTKRRNHGRNKKGRGHVRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHSKV 83          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.671e-29
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPR 359
            M  KR ++GRNK  RGHV  +RC+NC RC PKDKAIK+F +RN+VE+AA+RDI DAS + +Y++PK+Y KL YC++CAIH K+V            PPPR
Sbjct:    1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPR 100          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 4.059e-28
Identity = 58/106 (54.72%), Postives = 72/106 (67.92%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIVXXXXXXXXXXXAPPPRVRFNKD 377
            M  KR + GRNK+GRGHVK +RCSNC++C PKDKAIKRF +RN+VE AAIRD+ +A V   Y +PK+Y K+ +CVSCAIH  IV            PP R R  +D
Sbjct:    1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRRED 106          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.035e-23
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVF--AEYSVPKMYLKLQYCVSCAIHGKIV 311
            M +KR ++GR+K+GRG V  +RC+NC+RC PKDKA+KRF IR +VE+AA++DISD  VF    Y  P+ Y+K QYC+SCAIH  IV
Sbjct:    1 MTQKRRNHGRSKHGRGSVPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSHIV 86          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.652e-21
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 3
Query:   60 MVKKRASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFA--EYSVPKMYLKLQYCVSCAIHGKIV 311
            M  KR +NGRNK  +GH   VRC+NC R   KDKAIKRF  RNMV++++ RDI +   +A  ++++PK+Y+KL YCVSCAIH +IV
Sbjct:    1 MPSKRRNNGRNKKNKGHADTVRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHARIV 86          
BLAST of CX294360 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-17
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   72 RASNGRNKNGRGHVKPVRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYSVPKMYLKLQYCVSCAIHGKIV 311
            R ++GR K  RG    ++C  C   TPKDKAIKRF I++++E A+  D+  A+++  + VP+M  K Q+CVSCA H KIV
Sbjct:    2 RRNHGRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHAKIV 81          
The following BLAST results are available for this feature:
BLAST of CX294360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS261_ARATH1.490e-3055.6640S ribosomal protein S26-1 OS=Arabidopsis thalian... [more]
RS26_BRUPA1.648e-2965.0640S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_CAEEL3.671e-2955.0040S ribosomal protein S26 OS=Caenorhabditis elegan... [more]
RS26_ORYSJ4.059e-2854.7240S ribosomal protein S26 OS=Oryza sativa subsp. j... [more]
RS26_DICDI1.035e-2358.1440S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26_OXYNO1.652e-2154.6540S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU9.379e-1746.2540S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015F11SK FlavSen1 Citrus clementina cDNA clone C05015F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294360 ID=CX294360; Name=CX294360; organism=Citrus clementina; type=EST; length=518bp
ACTCGAGCAGTTTCAGCAGGTCACATACCCGCTGATTTTACTCGTCGCAA
GTCGCAAAGATGGTCAAGAAGAGAGCGTCCAACGGCCGCAACAAGAACGG
CAGGGGCCACGTCAAGCCTGTCCGTTGCTCCAACTGCTCGCGATGCACCC
CCAAGGACAAGGCCATCAAGAGATTCACCATCCGCAACATGGTTGAGTCC
GCCGCCATCCGTGACATCTCTGACGCCTCTGTCTTCGCTGAGTACTCTGT
CCCCAAGATGTACCTCAAGCTCCAGTACTGCGTTTCTTGCGCCATCCACG
GCAAGATCGTCCGTGTCCGTTCCCGCGAGGGCCGCCGTAACCGCGCTCCC
CCTCCTCGCGTGCGCTTCAACAAGGACGGCTAGAAGATCAACCCTCTTCA
GTCCGGCAAGGTCGCTGGCGCCCAGGCTTAAGCACGTCGCATGACCGAGA
AGATAACCTCAGACGAAGTTCGATTTTCATGCATCACGGCGAACAAGGAA
ATTATGGGGCGTCTGTCT
back to top