CX294546

Overview
NameCX294546
Unique NameCX294546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_PSEA7 (Chaperone protein htpG OS=Pseudomonas aeruginosa (strain PA7) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 44/170 (25.88%), Postives = 89/170 (52.35%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++     + +KK L ++ + V++S+RL+ SP +L   +      M ++++A      S  +    + +FEINP+HP+I+ L+A     PD++    +  +L+D A +++G + ++P     ++ ++L
Sbjct:  470 IDEWLMSYLPDFDGKSFVDVARGDLDLGSLDSEEDKKAQEEVAKSKEGLIERLKKVLDEQASEVRVSHRLTDSPAILAIGEQDLGLQMRQILEA------SGQKVPESKPIFEINPQHPLIEKLDAE----PDEDRFGELSHILFDQAALAAGDSLKDPGAYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_MYXXD (Chaperone protein htpG OS=Myxococcus xanthus (strain DK 1622) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 49/169 (28.99%), Postives = 81/169 (47.93%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFG--QTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            P+DE A Q L+ ++ K  V   + DL L               G       +K  L + V  V++S+RL+ SP  LV  + G  A +ERL++ +  G        R +R+ E+NP+HP+I++L A     P        ++LL+D AL++ G T  +P     ++  +L
Sbjct:  468 PVDEWAAQGLREFQGKPLVSALQADLKLQSTDEQKKEQEQHAEGLKTLTSKMKDVLQESVREVRVSDRLTDSPVCLVVPEGGSPAYLERLLQQRGRG----AGMPRVKRILEVNPKHPVIEHLKAVHDRDPAAAQVAEWIELLHDQALLTEGSTIADPNRFARRMTGLL 632          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANOR (Chaperone protein htpG OS=Xanthomonas oryzae pv. oryzae GN=htpG PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LG+ VA V++S+RL+ SP +L   +      M +L++A      S       + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDGKSFVDVARGDLDLGKLDSEEDKKAQEEVAKSKEGLASRIKAALGEDVAEVRVSHRLTDSPAILAIGQGDLGLQMRQLLEA------SGQAVPESKPVFEFNPTHPLIEKLDA-------EQDMDRFCDLSQVLFDQAALAAGDSLKDPAGYVKRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANOM (Chaperone protein htpG OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LG+ VA V++S+RL+ SP +L   +      M +L++A      S       + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDGKSFVDVARGDLDLGKLDSEEDKKAQEEVAKSKEGLASRIKAALGEDVAEVRVSHRLTDSPAILAIGQGDLGLQMRQLLEA------SGQAVPESKPVFEFNPTHPLIEKLDA-------EQDMDRFCDLSQVLFDQAALAAGDSLKDPAGYVKRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_NITEU (Chaperone protein htpG OS=Nitrosomonas europaea GN=htpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 57/178 (32.02%), Postives = 85/178 (47.75%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLG----XXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEMLGMN-LQGK 524
            IDE  V NL  Y  K+   I+K +LDLG                 F +  + +K+ LG++V  V+I+ RL+ SP  LV+     S N+ RL+K+       S  F+      EINP HP+IQ L        D +       +L+D AL++ G   E+PA    ++ ++L  N L GK
Sbjct:  475 IDEWLVANLNEYTGKSLQSIAKGNLDLGKLEDEEEKKEHEKEAGDFQELTNKMKEVLGEQVKDVRITYRLTESPACLVADTHDVSGNLGRLLKSAGQKVPDSKPFL------EINPHHPMIQRLKYEEAKFADWS------HILFDQALLAEGGQLEDPAGFVKRLNDLLLQNILSGK 640          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 49/171 (28.65%), Postives = 81/171 (47.37%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            P+DE  + +L  Y  K    ++K  LDLG               ++     + +K  L DKV+ V++S RL+ SP  LV  ++ +   M+RL+KA      +     +G+   EIN +HPI+Q ++       DD        +LYD AL++ G   E+PA    ++  +L
Sbjct:  475 PVDEWVITHLNEYDGKPLKSVAKGGLDLGELEDQAEKKAAEEATESHKDLLEKLKGALEDKVSEVRVSTRLTDSPACLVVGEYDFGMGMQRLLKA------AGHAMPQGKPALEINIDHPIVQRMDTGL----DDARFSDWAAVLYDQALLTEGGQLEDPAAFVKRVNALL 635          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANAC (Chaperone protein htpG OS=Xanthomonas axonopodis pv. citri GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 51/173 (29.48%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LGD VA +++S+RL+ SP +L   +      M +L++A      S       + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDGKSFVDVARGDLDLGKLDSEEDKKAQEEVAKSKEGLASRIKAALGDDVAELRVSHRLTDSPAILAIGQGDLGLQMRQLLEA------SGQAVPESKPVFEFNPTHPLIEKLDA-------EQDMDRFGDLSRVLFDQAALAAGDSLKDPAAYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_NITMU (Chaperone protein htpG OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 47/169 (27.81%), Postives = 84/169 (49.70%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEM 500
            +DE  V NL  ++ K+   ++K  LDLG                 + +  + IK+ LG++V  V+I+ RL+ SP  LV+     S N+ERL+K      ++  +    + + EINP HP+++ L +   +  D +       +L+D AL++ G   E+PA    +I ++
Sbjct:  475 VDEWLVANLPEFEGKHLQSVAKGSLDLGKLEDEAEKKEQEKEAGEYKELTEKIKEVLGEQVKDVRITLRLTESPACLVTETHDMSGNLERLLK------SAGQKVTHTKPILEINPYHPMVERLKSEETHFADWS------HILFDQALLAEGGQLEDPASFVKRINQL 631          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_BACSK (Chaperone protein htpG OS=Bacillus clausii (strain KSM-K16) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 48/167 (28.74%), Postives = 84/167 (50.30%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRV-VDLLYDAALVSSGFTPENPAELGSKIYEML 503
            +DE A++ L+SY EK F+ +S  DLD+                +  + +K  L  KV  V+ S RL S P V ++A    +  ME++++A         + ++  +V EINP H +  +L  A +   +D D L++  +LLY+ AL+  G   E+P E    + +++
Sbjct:  467 VDEFAIKMLRSYDEKEFMSVSSADLDIETDEKQEEETNSEENKKLFEKMKSILDGKVKDVRTSKRLKSHP-VFLAADGEITLEMEKVLQAM-----PDNQNVKAEKVLEINPNHDVFHSLKQAYE---EDEDKLKLYTNLLYNQALLIEGLPLEDPVEFSQNMCKVM 624          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_FRASC (Chaperone protein htpG OS=Frankia sp. (strain CcI3) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 46/172 (26.74%), Postives = 77/172 (44.77%), Query Frame = 3
Query:    3 PIDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX-----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            P+DE+ V+ +  +  K    I+K ++DL                   F     W+  +L D V  V++S+RL++SP  LV   F  +  +E++ +A         E  R +R+ E+NP H ++  L AA +   D        +LLY  AL++ G    +PA     + E L
Sbjct:  481 PVDEVWVERVAEFDGKPLKSIAKGEVDLDTDDEKKSSEAEREQLRKDFAALLPWLAAKLEDDVKEVRLSSRLTTSPACLVGDTFDMTPALEKMYRAM------GHEMPRPKRILELNPTHALVMGLRAAHERDADSAALGDTAELLYGMALLAEGGELRDPARFTRLLAERL 646          
The following BLAST results are available for this feature:
BLAST of CX294546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
HTPG_PSEA75.362e-1225.88Chaperone protein htpG OS=Pseudomonas aeruginosa (... [more]
HTPG_MYXXD5.362e-1228.99Chaperone protein htpG OS=Myxococcus xanthus (stra... [more]
HTPG_XANOR7.003e-1229.48Chaperone protein htpG OS=Xanthomonas oryzae pv. o... [more]
HTPG_XANOM7.003e-1229.48Chaperone protein htpG OS=Xanthomonas oryzae pv. o... [more]
HTPG_NITEU7.003e-1232.02Chaperone protein htpG OS=Nitrosomonas europaea GN... [more]
HTPG_ALHEH7.003e-1228.65Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HTPG_XANAC9.146e-1229.48Chaperone protein htpG OS=Xanthomonas axonopodis p... [more]
HTPG_NITMU9.146e-1227.81Chaperone protein htpG OS=Nitrosospira multiformis... [more]
HTPG_BACSK9.146e-1228.74Chaperone protein htpG OS=Bacillus clausii (strain... [more]
HTPG_FRASC1.195e-1126.74Chaperone protein htpG OS=Frankia sp. (strain CcI3... [more]

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Properties
Property NameValue
Genbank descriptionC05054A06SK FlavRip1 Citrus clementina cDNA clone C05054A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294546 ID=CX294546; Name=CX294546; organism=Citrus clementina; type=EST; length=673bp
ATCCCATCGATGAGATTGCGGTCCAGAACCTGAAATCGTATAAGGAGAAG
AATTTTGTCGACATTAGCAAGGAAGACTTGGATTTAGGTGAAAAGAATGA
GGAAAAAGAGAAGGTGATGAAGGAAGAGTTTGGCCAAACTTGTGATTGGA
TTAAGAAGCGATTGGGTGACAAAGTAGCTAGTGTTCAAATCTCAAATCGT
CTGAGCTCATCACCCTGTGTTCTGGTTTCTGCTAAGTTTGGTTGGTCAGC
CAACATGGAGAGGTTAATGAAGGCTCAAACAGTTGGTGATACCTCAAGTA
TGGAGTTCATGAGAGGAAGAAGAGTGTTTGAGATTAATCCTGAACACCCC
ATCATTCAAAACCTGAATGCTGCAAGCAAAAATTGCCCGGATGACAATGA
TGCCCTTCGAGTTGTAGATTTATTGTATGATGCAGCTCTGGTCTCTAGTG
GATTTACTCCTGAGAATCCGGCAGAGCTTGGCAGCAAGATATATGAAATG
TTAGGCATGAATTTACAAGGTAAATGGTCAGTTCCAGATGCTGCTGAGGT
TCAGCATCCAACAGCAACCCAATCACAGACCTCCCAACTTACGAAGCTGA
GGTGGTCGAGCCAGCAGAAGCCGGTGGTCAGAAATGAGGAGCTCACATTT
TTCCTTTTTCTGTCCTTATTTAG
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