CX294546

Overview
NameCX294546
Unique NameCX294546
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XYLFA (Chaperone protein htpG OS=Xylella fastidiosa GN=htpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 54/173 (31.21%), Postives = 86/173 (49.71%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVDI++ DLDLG               +T       IK  LG+ VA V++S+RL+ SP VL   +      M +L++A      S  +    + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  473 IDEWLMNYLHEFDGKSFVDIARGDLDLGNLDSEADKKAQEEIAKTKEALASRIKATLGEDVAEVRVSHRLTDSPAVLAIGEGDLGLQMRQLLEA------SGQKVPETKPVFEFNPSHPLIEKLDA-------EQDMDRFADLSHILFDQAALAAGDSLKDPANYVRRLNKLL 632          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            +DE  V +L  +  K    ++K DLDLG                 +    + I+  LGD V  V++++RL+ SP  LV+ +   S N+ERL+KA      +  +    + + EINP+H I+Q L    K+  D+        LL+D AL++ G   E+PA    ++  ML
Sbjct:  468 VDEWLVSSLTEFDGKKLQSVAKGDLDLGKLEDEAEKEQQKKTEDEYKPLVERIQAALGDSVKEVRVTHRLTDSPACLVAGEHDLSGNLERLLKA------AGQKTPGSKPILEINPDHGIVQRL----KDVTDEAKFADWAHLLFDQALLAEGGQLEDPAAFVRRVNAML 627          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_METCA (Chaperone protein htpG OS=Methylococcus capsulatus GN=htpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 52/170 (30.59%), Postives = 79/170 (46.47%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  V  L  Y+ K    +++ DLDLG                 F    + +KK L  KV  V++S+RL+ SP  L+S  +G S  MER+MK      ++       + + EINP H +I  LN  +    D      +  LL D A+++ G   ++PAE   K+  +L
Sbjct:  471 IDEWLVSYLTEYEGKPLQSVARGDLDLGKLEGEEEKAEAAAEKEAFAPLTERLKKALEAKVNDVRLSHRLTDSPACLISESYGMSRTMERIMK------SAGQNIPGSKPILEINPHHGLIARLNTEA----DQTRFQDLASLLLDQAVLAEGGQLDDPAEFVHKLNGLL 630          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_PSEPF (Chaperone protein htpG OS=Pseudomonas fluorescens (strain Pf0-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 49/171 (28.65%), Postives = 88/171 (51.46%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNL-NAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K FVD+++ DLDLG               ++     + +K  LGD VA V++S+RL+ SP +L   +      M ++++A      S  +    + +FE NP HP+I+ L N AS++   D     +  +L+D A +++G + ++PA   S++ ++L
Sbjct:  470 IDEWLMSYLSEFDGKTFVDVARGDLDLGNLDSEEDKKAAEEVAKSKEGLVERLKTALGDSVAEVRVSHRLTDSPAILAIGEQDLGLQMRQILEA------SGQKVPDSKPIFEFNPSHPLIEKLDNEASEDRFSD-----LSHILFDQAALAAGDSLKDPAAYVSRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_IDILO (Chaperone protein htpG OS=Idiomarina loihiensis GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 47/172 (27.33%), Postives = 87/172 (50.58%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXX----FGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKA--QTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  + +L  +KEK    +++ DLDLG                 F +  +  +K LGDKV  V+++NRL++SP  +++     S  M +LM+A  Q V +T        + +FE+NPEHP++Q +        +D+      ++L D A ++     ++PA   +++ +++
Sbjct:  476 IDEWLMSHLTEFKEKQLQSVTRGDLDLGELDDEEDKAEQEKAEEAFKENLERFEKALGDKVKKVRVTNRLTNSPACIITDDNDMSTQMAKLMEAAGQAVPET--------KYIFEVNPEHPLVQRMLT-----KEDDTFKEWAEVLLDQATLAERGNLKDPASFVTRLNKLM 634          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANC5 (Chaperone protein htpG OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 52/173 (30.06%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LGD VA V++S+RL+ SP +L   +      M +L++A      S       + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDGKSFVDVARGDLDLGKLDSEEDKKAQEDLAKSKEGLASRIKAALGDDVAEVRVSHRLTDSPAILAIGQGDLGLQMRQLLEA------SGQAVPESKPVFEFNPTHPLIEKLDA-------EQDMDRFGDLSRVLFDQAALAAGDSLKDPAAYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANCP (Chaperone protein htpG OS=Xanthomonas campestris pv. campestris GN=htpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKA--QTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LGD VA V++S+RL+ SP +L   +      M +L++A  Q V +T        + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDSKSFVDVARGDLDLGKLDSEEDKKAQEEVAKSKEGLASRIKAALGDDVAEVRVSHRLTDSPAILAIGQGDLGLQMRQLLEASGQAVPET--------KPVFEFNPAHPLIEKLDA-------EQDMDRFGDLSRVLFDQAALAAGDSLKDPAGYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_XANC8 (Chaperone protein htpG OS=Xanthomonas campestris pv. campestris (strain 8004) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKA--QTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDL---LYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K+FVD+++ DLDLG               ++       IK  LGD VA V++S+RL+ SP +L   +      M +L++A  Q V +T        + VFE NP HP+I+ L+A       + D  R  DL   L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDSKSFVDVARGDLDLGKLDSEEDKKAQEEVAKSKEGLASRIKAALGDDVAEVRVSHRLTDSPAILAIGQGDLGLQMRQLLEASGQAVPET--------KPVFEFNPAHPLIEKLDA-------EQDMDRFGDLSRVLFDQAALAAGDSLKDPAGYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.105e-12
Identity = 45/170 (26.47%), Postives = 89/170 (52.35%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K FVD+++ DLDLG               ++     + +KK L ++V+ V++S+RL+ SP +L   +      M ++++A      S  +    + +FEINP+HP+I+ L+A     PD++    +  +L+D A +++G + ++P     ++ ++L
Sbjct:  470 IDEWLMSYLPEFDGKQFVDVARGDLDLGSLDSEEDKKAQEEVAKSKEGLIERLKKVLDEQVSEVRVSHRLTDSPAILAIGEQDLGLQMRQILEA------SGQKVPDSKPIFEINPQHPLIEKLDAE----PDEDRFGELSHILFDQAALAAGDSLKDPGAYVRRLNKLL 629          
BLAST of CX294546 vs. ExPASy Swiss-Prot
Match: HTPG_PSEMY (Chaperone protein htpG OS=Pseudomonas mendocina (strain ymp) GN=htpG PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 44/170 (25.88%), Postives = 87/170 (51.18%), Query Frame = 3
Query:    6 IDEIAVQNLKSYKEKNFVDISKEDLDLGXXXXXXXXXXXXXFGQT----CDWIKKRLGDKVASVQISNRLSSSPCVLVSAKFGWSANMERLMKAQTVGDTSSMEFMRGRRVFEINPEHPIIQNLNAASKNCPDDNDALRVVDLLYDAALVSSGFTPENPAELGSKIYEML 503
            IDE  +  L  +  K FVD+++ DLDLG               +      + +K  LG++V  V++S+RL+ SP +L   +      M ++++A      S  +    + +FE NP HP+I+ L+A +    D++  + +  +L+D A +++G + ++PA    ++ ++L
Sbjct:  470 IDEWLMSYLTEFDGKQFVDVARGDLDLGKLDSEEDKKAQEEVAKAKEGLIERLKGALGEQVKEVRVSHRLTDSPAILAIGEQDLGLQMRQILEA------SGQKVPESKPIFEFNPSHPLIERLDAEA----DEDRFVDLTHILFDQAALAAGDSLKDPAAYVQRLNKLL 629          
The following BLAST results are available for this feature:
BLAST of CX294546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
HTPG_XYLFA4.850e-1331.21Chaperone protein htpG OS=Xylella fastidiosa GN=ht... [more]
HTPG_METFK1.080e-1230.00Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_METCA1.411e-1230.59Chaperone protein htpG OS=Methylococcus capsulatus... [more]
HTPG_PSEPF2.407e-1228.65Chaperone protein htpG OS=Pseudomonas fluorescens ... [more]
HTPG_IDILO2.407e-1227.33Chaperone protein htpG OS=Idiomarina loihiensis GN... [more]
HTPG_XANC53.143e-1230.06Chaperone protein htpG OS=Xanthomonas campestris p... [more]
HTPG_XANCP4.105e-1230.86Chaperone protein htpG OS=Xanthomonas campestris p... [more]
HTPG_XANC84.105e-1230.86Chaperone protein htpG OS=Xanthomonas campestris p... [more]
HTPG_PSEAE4.105e-1226.47Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]
HTPG_PSEMY5.362e-1225.88Chaperone protein htpG OS=Pseudomonas mendocina (s... [more]

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Properties
Property NameValue
Genbank descriptionC05054A06SK FlavRip1 Citrus clementina cDNA clone C05054A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294546 ID=CX294546; Name=CX294546; organism=Citrus clementina; type=EST; length=673bp
ATCCCATCGATGAGATTGCGGTCCAGAACCTGAAATCGTATAAGGAGAAG
AATTTTGTCGACATTAGCAAGGAAGACTTGGATTTAGGTGAAAAGAATGA
GGAAAAAGAGAAGGTGATGAAGGAAGAGTTTGGCCAAACTTGTGATTGGA
TTAAGAAGCGATTGGGTGACAAAGTAGCTAGTGTTCAAATCTCAAATCGT
CTGAGCTCATCACCCTGTGTTCTGGTTTCTGCTAAGTTTGGTTGGTCAGC
CAACATGGAGAGGTTAATGAAGGCTCAAACAGTTGGTGATACCTCAAGTA
TGGAGTTCATGAGAGGAAGAAGAGTGTTTGAGATTAATCCTGAACACCCC
ATCATTCAAAACCTGAATGCTGCAAGCAAAAATTGCCCGGATGACAATGA
TGCCCTTCGAGTTGTAGATTTATTGTATGATGCAGCTCTGGTCTCTAGTG
GATTTACTCCTGAGAATCCGGCAGAGCTTGGCAGCAAGATATATGAAATG
TTAGGCATGAATTTACAAGGTAAATGGTCAGTTCCAGATGCTGCTGAGGT
TCAGCATCCAACAGCAACCCAATCACAGACCTCCCAACTTACGAAGCTGA
GGTGGTCGAGCCAGCAGAAGCCGGTGGTCAGAAATGAGGAGCTCACATTT
TTCCTTTTTCTGTCCTTATTTAG
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