CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_ASPFU (Histone acetyltransferase type B subunit 2 OS=Aspergillus fumigatus GN=hat2 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 53/184 (28.80%), Postives = 87/184 (47.28%), Query Frame = 2
Query:   38 RTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            RT+  H+  V +  ++P HS +  + S D TL+I D+RE  +T    +    H   I A  +N   + ++A+ S DK+I +WD+RN +  +  L  H  +V  + + P    +LAS SYD  +  WD          EDA      L+ ++  HT        ++    +L S   D L+ VW+
Sbjct:  233 RTYTHHSSIVNDVQYHPLHSSLIGTVSDDITLQILDIRESETTRAAASTEGQHRDAINAIAFNPAAETVLATGSADKTIGLWDLRNLKTKLHSLESHTDSVTSISWHPFEEAVLASASYDRKIAFWDLSRAGEEQTPEDAQDGPPELLFQHGGHTNRISDFSWNLNDPWVLCSAAEDNLLQVWK 416          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: GRWD1_DICDI (Glutamate-rich WD repeat-containing protein 1 OS=Dictyostelium discoideum GN=grwd1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.450e-15
Identity = 38/133 (28.57%), Postives = 70/133 (52.63%), Query Frame = 2
Query:   29 TSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVED 421
            T  + FK H   V +  W+P    VF S S D T+RIWD+R+    + + AH  ++    W++  + L+ S   D S ++WD+R ++   P++    H   +  ++++P+  + +   S D  V +WDF +E+
Sbjct:  287 TDTQAFKGHTESVEDIQWSPSEEKVFASCSIDQTVRIWDIRKPKPAITVKAHTADVNVISWSRNVEYLLVSGCDDGSFRVWDLRAFKDNSPVSDFKYHTGPITSIEWNPYEESQVIVSSSDDQVTIWDFSLEE 419          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR17_HUMAN (WD repeat-containing protein 17 OS=Homo sapiens GN=WDR17 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 53/183 (28.96%), Postives = 89/183 (48.63%), Query Frame = 2
Query:    8 LWTVDRPTSVRTFKEHA----YCVYNATWNPRHSD--VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDV-RNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            +W V +   ++ F EH     +C+    W+ + S     CS+ G C +R  D    G  +    H   +  CDW++ +  +IA+   D +++++ V  +   P+ V +GH   V  VK+SP R  +L S S D TV +WD+  +DA +   + HT    G+  +  +  LL S  WD  + VW
Sbjct:  463 IWNVQKGKIIQRFNEHGTNGIFCI---AWSHKDSKRIATCSSDGFCIIRTID----GKVLHKYKHPAAVFGCDWSQNNKDMIATGCEDTNVRVYYVATSSDQPLKVFSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDY-TQDACINILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVW 637          

HSP 2 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 53/187 (28.34%), Postives = 78/187 (41.71%), Query Frame = 2
Query:   20 DRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMDPRAV*YLLGR 580
            D+P  V  F  H   V++  W+P    + CS S D T+RIWD  +     I+  H   +    WN     L+ S S D +IK+WD R     +  +  HG  V  +   P R   +ASCS D TV LW               T     V +++     LA   W+E++      ++P     L G+
Sbjct:  556 DQPLKV--FSGHTAKVFHVKWSPLREGILCSGSDDGTVRIWDYTQDACINILNGHTAPVRGLMWNTEIPYLLISGSWDYTIKVWDTRE-GTCVDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSL-------------TALVTPVQINI-----LADRSWEEIIGNTDYAIEPGTPPLLCGK 721          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBA1_CAEEL (Probable histone-binding protein rba-1 OS=Caenorhabditis elegans GN=rba-1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            FK H+    + +++  H+ VF S   D  L +WD+R+    +    H  E+    +N + + ++A+ SVDK++ +WD+RN R  +  L  H   + +V FSPH   +LAS   D  V +WD
Sbjct:  217 FKGHSSNAEDVSFHALHNFVFGSVGDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDMRNMRKKMYTLKHHNDEIFQVSFSPHYETVLASSGSDDRVIVWD 337          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_ASPOR (Histone acetyltransferase type B subunit 2 OS=Aspergillus oryzae GN=hat2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 57/203 (28.08%), Postives = 93/203 (45.81%), Query Frame = 2
Query:    2 VKLWTVDRPTS-------VRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPA----HEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            V+LW +   T         RT+  H+  V +  ++P HS +  + S D TL+I D+RE  +T    +    H   I A  +N   + ++A+ S DKSI +WD+RN +  +  L  H  +V  + + P   ++LAS SYD  +  WD          +DA      L+  +  HT        ++    +L S   D L+ VW+
Sbjct:  214 VRLWDLTTYTKGNKALKPSRTYTHHSSIVNDVQYHPLHSSLIGTVSDDITLQILDIREAETTRAAASAEGQHRDAINAIAFNPAAETVLATGSADKSIGLWDLRNLKTKLHTLECHTDSVTSLSWHPFEESVLASASYDRKIMFWDLSRSGEEQTPDDAQDGPPELLFMHGGHTNRISDFSWNLNDPWVLCSAAEDNLLQVWK 416          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 52/180 (28.89%), Postives = 89/180 (49.44%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHH--TEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            +K+W V+    V+T K H   V+  ++NP+ S++  S S D  +RIWDV     T +I AH   +    +N+ D  L+ S S D +++IWD    ++   +    G  V  VKFSP+ + +LA  + D T+ LW +      +  Y  H   ++ +    SV     + +   D L+Y++
Sbjct:  112 IKIWDVESGKMVKTLKGHKEYVFGVSFNPQ-SNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNR-DGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAG-TLDNTLRLWSYNNNKKCLKTYTGHKNEKYCIFSTFSVTCGKWIVTGSEDNLIYIY 288          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBBP7_RAT (Histone-binding protein RBBP7 OS=Rattus norvegicus GN=Rbbp7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            F  H+  V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ +WQ
Sbjct:  222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 402          

HSP 2 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 46/165 (27.88%), Postives = 75/165 (45.45%), Query Frame = 2
Query:   68 YNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            Y  +WN   S    SAS D T+ +WD+       + + +  I   H   +    W+   + L  S + D+ + IWD R+     P  +++ H   V  + F+P+   +LA+ S D TV LWD       +  ++ H +    V  S   E +LAS+G D  + VW
Sbjct:  180 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 344          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBBP7_MOUSE (Histone-binding protein RBBP7 OS=Mus musculus GN=Rbbp7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            F  H+  V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ +WQ
Sbjct:  222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 402          

HSP 2 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 46/165 (27.88%), Postives = 75/165 (45.45%), Query Frame = 2
Query:   68 YNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            Y  +WN   S    SAS D T+ +WD+       + + +  I   H   +    W+   + L  S + D+ + IWD R+     P  +++ H   V  + F+P+   +LA+ S D TV LWD       +  ++ H +    V  S   E +LAS+G D  + VW
Sbjct:  180 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 344          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBBP7_MACFA (Histone-binding protein RBBP7 OS=Macaca fascicularis GN=RBBP7 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            F  H+  V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ +WQ
Sbjct:  222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 402          

HSP 2 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 46/165 (27.88%), Postives = 75/165 (45.45%), Query Frame = 2
Query:   68 YNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            Y  +WN   S    SAS D T+ +WD+       + + +  I   H   +    W+   + L  S + D+ + IWD R+     P  +++ H   V  + F+P+   +LA+ S D TV LWD       +  ++ H +    V  S   E +LAS+G D  + VW
Sbjct:  180 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 344          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBBP7_HUMAN (Histone-binding protein RBBP7 OS=Homo sapiens GN=RBBP7 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.130e-15
Identity = 47/181 (25.97%), Postives = 83/181 (45.86%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            F  H+  V +  W+  H  +F S + D  L IWD R   ++    ++ AH  E+    +N Y + ++A+ S DK++ +WD+RN ++ +     H   + +V +SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ +WQ
Sbjct:  222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 402          

HSP 2 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 46/165 (27.88%), Postives = 75/165 (45.45%), Query Frame = 2
Query:   68 YNATWNPRHSDVFCSASGDCTLRIWDV-------REMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRV--PIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            Y  +WN   S    SAS D T+ +WD+       + + +  I   H   +    W+   + L  S + D+ + IWD R+     P  +++ H   V  + F+P+   +LA+ S D TV LWD       +  ++ H +    V  S   E +LAS+G D  + VW
Sbjct:  180 YGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 344          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
HAT2_ASPFU2.450e-1528.80Histone acetyltransferase type B subunit 2 OS=Aspe... [more]
GRWD1_DICDI2.450e-1528.57Glutamate-rich WD repeat-containing protein 1 OS=D... [more]
WDR17_HUMAN3.200e-1528.96WD repeat-containing protein 17 OS=Homo sapiens GN... [more]
RBA1_CAEEL3.200e-1532.23Probable histone-binding protein rba-1 OS=Caenorha... [more]
HAT2_ASPOR4.180e-1528.08Histone acetyltransferase type B subunit 2 OS=Aspe... [more]
WDR5_DICDI5.459e-1528.89WD repeat-containing protein 5 homolog OS=Dictyost... [more]
RBBP7_RAT7.130e-1525.97Histone-binding protein RBBP7 OS=Rattus norvegicus... [more]
RBBP7_MOUSE7.130e-1525.97Histone-binding protein RBBP7 OS=Mus musculus GN=R... [more]
RBBP7_MACFA7.130e-1525.97Histone-binding protein RBBP7 OS=Macaca fascicular... [more]
RBBP7_HUMAN7.130e-1525.97Histone-binding protein RBBP7 OS=Homo sapiens GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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