CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 47/181 (25.97%), Postives = 85/181 (46.96%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGST---MIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            FK H   V +  W+ RH  +F S   D  L IWD+R   ++     + AH  E+    +N +++ ++A+ S DK++K++D+R     +   + H   V +V ++P    +LASC     + +WD         VEDA      L+  +  HT        +   + +++S   D ++ +WQ
Sbjct:  223 FKAHEGVVEDVAWHLRHEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQ 403          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB2_HUMAN (WD repeat and SOCS box-containing protein 2 OS=Homo sapiens GN=WSB2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 58/190 (30.53%), Postives = 91/190 (47.89%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-----------VEGL-LASTGWDELVYVW 535
            +K+W V     +     H   V + ++ P  S +  SAS D TLRIWD+ + G  + + +   + + C     D  ++ SA+ +KS+ +W +R+Y + I  L GH  +V    FSP    LL + SYD  V +WD    + L  R  HHT+    +D S +            EGL LA+   D L+ +W
Sbjct:  135 IKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTL-IRKLEGHQSSVVSCDFSPDSA-LLVTASYDTNVIMWDPYTGERL--RSLHHTQVDPAMDDSDVHISSLRSVCFSPEGLYLATVADDRLLRIW 320          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.621e-14
Identity = 49/185 (26.49%), Postives = 88/185 (47.57%), Query Frame = 2
Query:   32 SVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIP---AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            +++ FK H   V +  W+ RH  +F S   D  L +WD+R    T  I    AH+ E+    +N +++ ++A+ S DK++K++D+R     +  L+ H   V +V ++P    +LASC     + +WD          EDA      L+  +  HT        +   + ++AS   D ++ +WQ
Sbjct:  219 AMQIFKVHEGVVEDVAWHLRHEYLFGSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQ 403          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB2_BOVIN (WD repeat and SOCS box-containing protein 2 OS=Bos taurus GN=WSB2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.036e-14
Identity = 58/190 (30.53%), Postives = 91/190 (47.89%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVL-----------VEGL-LASTGWDELVYVW 535
            +K+W V     +     H   V + ++ P  S +  SAS D TLRIWD+ + G  + + +   + + C     D  ++ SA+ +KS+ +W +R+Y + I  L GH  +V    FSP    LL + SYD  V +WD    + L  R  HHT+    +D S +            EGL LA+   D L+ +W
Sbjct:  137 IKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTL-IRKLEGHQSSVVSCDFSPDSA-LLVTASYDTNVIMWDPYTGERL--RSLHHTQLNPPMDDSDVHISSLRSVCFSPEGLYLATVADDRLLRIW 322          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB2_MOUSE (WD repeat and SOCS box-containing protein 2 OS=Mus musculus GN=Wsb2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.883e-14
Identity = 60/190 (31.58%), Postives = 92/190 (48.42%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVD-----MSVL------VEGL-LASTGWDELVYVW 535
            +K+W V     +     H   V + ++ P  S +  SAS D TLRIWD+ + G  + + +   + + C     D  ++ SA+ +KS+ +W +R+Y + I  L GH  +V    FSP    LL + SYD +V +WD      L  R  HHT+    +D     MS L       EGL LA+   D L+ +W
Sbjct:  135 IKIWEVQTGLLLLNLSGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSVFLWSMRSYTL-IRKLEGHQSSVVSCDFSPDSA-LLVTASYDTSVIMWDPYTGARL--RSLHHTQLEPTMDDSDVHMSSLRSVCFSPEGLYLATVADDRLLRIW 320          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR38_HUMAN (WD repeat-containing protein 38 OS=Homo sapiens GN=WDR38 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.030e-13
Identity = 45/146 (30.82%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  101 VFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            +F SAS DCT+R+WDV       ++  H+  +    ++  D   +AS   DK + +WDV++ ++ + +L GH  +++   FSP   N LA+ S+D TV +WD  +    V         A    +     GLLAS  WD+ +++W+
Sbjct:   77 LFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSP-DSRQLASGGWDKRVMLWDVQSGQM-LRLLVGHRDSIQSSDFSP-TVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWK 219          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 61/179 (34.08%), Postives = 87/179 (48.60%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFC-SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V +W V +P  + +   H   V    +N     V   S SG  +LR+WD+        +  H+  I + D++   + L AS SVD +IK+WDVR  +  +    GH  AVR + FSP  +  LAS S D TV LWD ++   ++  +  HT  AV V      E LLAS   D  V +W
Sbjct:   45 VNIWAVSKPNCIMSLTGHTSAVGCIQFNSSEERVVAGSLSG--SLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYL-ASGSVDSNIKLWDVRR-KGCVFRYKGHTQAVRCLAFSPDGK-WLASASDDSTVKLWD-LIAGKMITEFTSHTS-AVNVVQFHPNEYLLASGSADRTVKLW 216          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 55/178 (30.90%), Postives = 88/178 (49.44%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V+LW +     ++TFK H   V +  ++P +S +  S S D T+R+WD+       I   H   + +  +N  D  ++A+ S D+++++WD+ + +    +  GH   VR V FS     +LAS S D TV LWD    + L      HT     V  S     +LAS G D++V +W
Sbjct:  930 VRLWDISSGQCLKTFKGHTSRVRSVVFSP-NSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFN-LDGSMLATGSGDQTVRLWDISSSQC-FYIFQGHTSCVRSVVFSSDGA-MLASGSDDQTVRLWDISSGNCLY-TLQGHTSCVRSVVFSP-DGAMLASGGDDQIVRLW 1101          

HSP 2 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 50/179 (27.93%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            V+LW +     + T + H   V    ++P  + +  S SGD T+R+WD+       I+  H   + +  +N  D   +AS S D+++++W++ + +  +    GH   V  V F+P   ++LAS S D TV LWD      L   +  HT +   V  +     +LAS   D+ V +W+
Sbjct: 1140 VRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATL-ASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNP-DGSTLASGSSDQTVRLWEINSSKC-LCTFQGHTSWVNSVVFNPD-GSMLASGSSDKTVRLWDISSSKCL-HTFQGHTNWVNSVAFNP-DGSMLASGSGDQTVRLWE 1312          

HSP 3 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL--VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V+LW +     +  F+ H   VY+  +N   S +  + SGD T+R+WD+       I   H   + +  ++  D  ++AS S D+++++WD+ +    +  L GH   VR V FSP    +LAS   D  V LWD    + L  +  Y     F V     V     LA+   D++V +W
Sbjct:  972 VRLWDISSGECLYIFQGHTGWVYSVAFNLDGS-MLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSS-DGAMLASGSDDQTVRLWDISSGNC-LYTLQGHTSCVRSVVFSPDGA-MLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV----TLANGSSDQIVRLW 1143          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: RBBP7_PONAB (Histone-binding protein RBBP7 OS=Pongo abelii GN=RBBP7 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 46/182 (25.27%), Postives = 83/182 (45.60%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM---IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAV-RKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQ 538
            F  H+  V +  W+  H  +F S + D  L +WD R   ++    ++ AH  E+    +N Y + ++A+ S DK++ +WD+RN ++ +     H   + + V +SPH   +LAS   D  + +WD          EDA      L+  +  HT        +     ++ S   D ++ +WQ
Sbjct:  222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMMWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 403          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_XENTR (Katanin p80 WD40-containing subunit B1 OS=Xenopus tropicalis GN=katnb1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.995e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V LW+V++P  + +   H   V +  +N    ++  + S   +LR+WD+        +  H+  + + D++ Y D  +AS S+D +IK+WDVR  +  +    GH  AVR ++FSP  +  LAS S D +V LWD      +    +H  +  V +      E LLAS   D  V  W
Sbjct:   45 VNLWSVNKPNCIMSLTGHTTPVESVRFN-NAEELIVAGSQSGSLRVWDLEAAKILRTLMGHKANVCSLDFHPYGD-FVASGSLDTNIKLWDVRR-KGCVFRYKGHTQAVRCLRFSPDGK-WLASASDDHSVKLWDLTAGKMMAELSEH--KGPVNIIEFHPNEYLLASGSADRTVRFW 216          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
MSI1_ARATH3.538e-1425.97WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
WSB2_HUMAN4.621e-1430.53WD repeat and SOCS box-containing protein 2 OS=Hom... [more]
MSI1_SOLLC4.621e-1426.49WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
WSB2_BOVIN6.036e-1430.53WD repeat and SOCS box-containing protein 2 OS=Bos... [more]
WSB2_MOUSE7.883e-1431.58WD repeat and SOCS box-containing protein 2 OS=Mus... [more]
WDR38_HUMAN1.030e-1330.82WD repeat-containing protein 38 OS=Homo sapiens GN... [more]
KTNB1_DANRE1.345e-1334.08Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
YY46_ANASP2.995e-1330.90Uncharacterized WD repeat-containing protein alr34... [more]
RBBP7_PONAB2.995e-1325.27Histone-binding protein RBBP7 OS=Pongo abelii GN=R... [more]
KTNB1_XENTR2.995e-1330.34Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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