CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4226 contig Ccv1_Contig4226:588..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: YZLL_CAEEL (Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 53/179 (29.61%), Postives = 87/179 (48.60%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH-HTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            VK++ V     V+T K H   V+   +NP  + +  S S D T+RIW  R   +   IP HE  + +  +N+ D   +AS S D  ++IWD         +++     +  VKFSP+ + +LAS + + T+ LWD+     L     H ++++ V  + SV     + S   D  VY+W
Sbjct:  172 VKVFDVSSGRCVKTLKGHTNYVFCCCFNPSGT-LIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNR-DGAYLASGSYDGIVRIWDSTTGTCVKTLIDEEHPPITHVKFSPNGKYILAS-NLNNTLKLWDYQKLRVLKEYTGHENSKYCVAANFSVTGGKWIVSGSEDHKVYIW 347          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: GRWD1_HUMAN (Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens GN=GRWD1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.912e-13
Identity = 43/142 (30.28%), Postives = 69/142 (48.59%), Query Frame = 2
Query:   11 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 418
            W VD+    R F  H   V +  W+P  + VF S S D ++RIWD+R   S   +     AH+ ++    W++ +  L+ S   D ++KIWD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  250 WHVDQ----RPFVGHTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWDLAVE 386          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 2
Query:    8 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            LW          +  H   V +  ++P H ++  SAS D T+R+W   + G      AH   + + D++  D   +A+AS DKSIK+W +   R  +  L  H + VR  KFSP  R L+ SCS D T+ +WD       V  +     FA  VD +      +AS G D+ V VW
Sbjct:   44 LWNFKPHARAYRYVGHKDVVTSVQFSP-HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSA-DGQFLATASEDKSIKVWSMYRQRF-LYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTIKIWD-TTNKQCVNNFSDSVGFANFVDFNP-SGTCIASAGSDQTVKVW 213          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.109e-13
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 2
Query:    8 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            LW          +  H   V +  ++P H ++  SAS D T+R+W   + G      AH   + + D++  D   +A+AS DKSIK+W +   R  +  L  H + VR  KFSP  R L+ SCS D T+ +WD       V  +     FA  VD +      +AS G D+ V VW
Sbjct:   44 LWNFKPHARAYRYVGHKDVVTSVQFSP-HGNLLASASRDRTVRLWIPDKRGKFSEFKAHTAPVRSVDFSA-DGQFLATASEDKSIKVWSMYRQRF-LYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTIKIWD-TTNKQCVNNFSDSVGFANFVDFNP-SGTCIASAGSDQTVKVW 213          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V LW+V++P  + +   H   V +  +N    ++  + S   +LRIWD+        +  H+  + + D++ Y +  +AS S+D +IK+WDVR  +  +    GH  AVR ++FSP  +  LAS S D +V LWD      +    +H  +  V +      E LLAS   D  V  W
Sbjct:   45 VHLWSVNKPNCIMSLTGHTTPVESVRFN-NSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGE-FVASGSLDTNIKLWDVRR-KGCVFRYKGHTQAVRCLRFSPDGK-WLASASDDHSVKLWDLTAGKMMAELSEH--KGPVNIIEFHPNEYLLASGSADRTVRFW 216          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: GRWD1_RAT (Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 2
Query:   11 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 418
            W VD+    R F  H   V +  W+P    VF S S D ++RIWD+R   G   ++    AH+ ++    W++ +  L+ S   D ++K+WD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  249 WNVDQ----RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTAAAHDGDVNVISWSRREPFLL-SGGDDGTLKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVE 385          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: GRWD1_MOUSE (Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus GN=Grwd1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.715e-13
Identity = 42/142 (29.58%), Postives = 69/142 (48.59%), Query Frame = 2
Query:   11 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREM-GSTMII---PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 418
            W VD+    R F  H   V +  W+P    VF S S D ++RIWD+R   G   ++    AH+ ++    W++ +  L+ S   D ++K+WD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  250 WNVDQ----RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVE 386          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: GRWD1_BOVIN (Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus GN=GRWD1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 42/142 (29.58%), Postives = 68/142 (47.89%), Query Frame = 2
Query:   11 WTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMII----PAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYR--VPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVE 418
            W VD+    R F  H   V +  W+P    VF S S D ++RIWD+R   S   +     AH+ ++   +W+  +  L+ S   D ++K+WD+R ++   P+A    H   V  V++ P    + A+   D  +  WD  VE
Sbjct:  250 WHVDQ----RPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPSKACMLTTATAHDGDVNVINWSHREPFLL-SGGDDGALKVWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADNQITQWDLAVE 386          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB1_XENTR (WD repeat and SOCS box-containing protein 1 OS=Xenopus tropicalis GN=wsb1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            +K+W V     +    +H   V + T+ P  S +  SAS D TLR+WD+++ G+ M ++  H+  +  C ++  D  ++ S    K++ +WD+  Y + I  L+GH   V   +FSP    LLA+ SYD  V +WD
Sbjct:  152 IKIWDVYTGKLLLNLMDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYCCAFSP-DSSMLCSVGAGKAVFLWDMDKYTM-IRKLDGHYNDVVACEFSPDGA-LLATASYDTRVYVWD 284          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 56/181 (30.94%), Postives = 87/181 (48.07%), Query Frame = 2
Query:    8 LWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGMD 550
            LW++        +  H   V +  ++P+  ++  SAS D T+R+W +   G +    AH   + + D++  D  L+ +AS DKSIK+W +   R  +  L  H + VR  KFSP  R L+ SCS D T+ +WD       V  +     FA  VD +      +AS G D  V +W   M+
Sbjct:   44 LWSLKPHARAYRYVGHKDVVTSLQFSPQ-GNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSA-DGQLLVTASEDKSIKVWSMFRQRF-LYSLYRHTHWVRCAKFSPDGR-LIVSCSEDKTIKIWD-TTNKQCVNNFSDSVGFANFVDFNP-NGTCIASAGSDHAVKIWDIRMN 218          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
YZLL_CAEEL3.912e-1329.61Uncharacterized WD repeat-containing protein K04G1... [more]
GRWD1_HUMAN3.912e-1330.28Glutamate-rich WD repeat-containing protein 1 OS=H... [more]
WD51B_PONAB5.109e-1332.39WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WD51B_HUMAN5.109e-1332.39WD repeat-containing protein 51B OS=Homo sapiens G... [more]
KTNB1_XENLA8.715e-1330.34Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
GRWD1_RAT8.715e-1329.58Glutamate-rich WD repeat-containing protein 1 OS=R... [more]
GRWD1_MOUSE8.715e-1329.58Glutamate-rich WD repeat-containing protein 1 OS=M... [more]
GRWD1_BOVIN1.138e-1229.58Glutamate-rich WD repeat-containing protein 1 OS=B... [more]
WSB1_XENTR1.487e-1232.35WD repeat and SOCS box-containing protein 1 OS=Xen... [more]
WD51B_MOUSE1.487e-1230.94WD repeat-containing protein 51B OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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