CX294547

Overview
NameCX294547
Unique NameCX294547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length599
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4226 contig Ccv1_Contig4226:588..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWN-PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V LW++++P  + +   H   V +   N P    V  S SG  ++R+WD+        +  H+  I + D++ Y +  +AS S D +IK+WD+R  +  +    GH  AVR ++FSP  +  LAS + D TV LWD +    ++  +  HT   V V      E LLAS   D  +  W
Sbjct:   45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSG--SIRVWDLEAAKILRTLMGHKANICSLDFHPYGE-FVASGSQDTNIKLWDIRR-KGCVFRYRGHSQAVRCLRFSPDGK-WLASAADDHTVKLWD-LTAGKMMSEFPGHTG-PVNVVEFHPNEYLLASGSSDRTIRFW 216          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.487e-12
Identity = 56/179 (31.28%), Postives = 88/179 (49.16%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWN-PRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVW 535
            V LW++++P  + +   H   V +   N P    V  S SG  ++R+WD+        +  H+  I + D++ Y +  +AS S D +IK+WD+R  +  +    GH  AVR ++FSP  +  LAS + D TV LWD +    ++  +  HT   V V      E LLAS   D  +  W
Sbjct:   45 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSG--SIRVWDLEAAKILRTLMGHKANICSLDFHPYGE-FVASGSQDTNIKLWDIRR-KGCVFRYRGHSQAVRCLRFSPDGK-WLASAADDHTVKLWD-LTAGKMMSEFPGHTG-PVNVVEFHPNEYLLASGSSDRTIRFW 216          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WSB1_HUMAN (WD repeat and SOCS box-containing protein 1 OS=Homo sapiens GN=WSB1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 43/136 (31.62%), Postives = 73/136 (53.68%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTM-IIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            +K+W V     +    +H   V + T+ P  S +  SAS D TLR+WD+++ G+ M ++  H+  + +C ++  D  ++ S    K++ +W++  Y + I  L GH + V    FSP    LLA+ SYD  V +WD
Sbjct:  152 IKIWDVYTGKLLLNLVDHTEVVRDLTFAPDGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSP-DSSMLCSVGASKAVFLWNMDKYTM-IRKLEGHHHDVVACDFSPDGA-LLATASYDTRVYIWD 284          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR5B_HUMAN (WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 53/179 (29.61%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVW 535
            +KLW V     ++T K H+  V+   +NP  S++  S S D T++IW+V+       + AH   + A  +N     LI S S D   +IWD  + +    +++     V  VKFSP+ + +L + + D T+ LWD+     L     H  E + +  + SV     + S   D LVY+W
Sbjct:  107 LKLWDVRSGKCLKTLKGHSNYVFCCNFNPP-SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFN-CSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYIL-TATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 282          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: MSI2_ARATH (WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana GN=MSI2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.942e-12
Identity = 33/121 (27.27%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   44 FKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWD 406
            ++ H   + + +W+ ++ ++F SA  D  L IWD R       +  HE E+    +N +++ ++A+AS D ++ ++D+R    P+ V++ H   V +V++ P+   +LAS   D  + +WD
Sbjct:  213 YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWD 333          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.312e-12
Identity = 57/181 (31.49%), Postives = 87/181 (48.07%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDAL-VGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQ 541
            V +W V    S+  ++EH    ++  ++     +  S S DC +++W  R+  S + I   +  I    +N      IA  S D  I  +D+RN   P+ V +GH  AV  VKF  +  N LAS S D T+ LWD  V+D L V  +  HT     V ++V  E L   +  +E VYV+ +
Sbjct:  445 VTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVINIDM-KANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYVKFLSN--NELASASTDSTLRLWD--VKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNE-VYVYHK 619          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: WDR5B_PONAB (WD repeat-containing protein 5B OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 52/179 (29.05%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTE-FAVGVDMSVLVEGLLASTGWDELVYVW 535
            +KLW +     ++T K H+  V+   +NP  S++  S S D T++IW+V+       + AH   + A  +N     LI S S D   +IWD  + +    +++     V  VKFSP+ + +L + + D T+ LWD+     L     H  E + +  + SV     + S   D LVY+W
Sbjct:  107 LKLWDMRSGKCLKTLKGHSNYVFCCNFNPP-SNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFN-CSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYIL-TATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 282          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: HAT2_ASHGO (Histone acetyltransferase type B subunit 2 OS=Ashbya gossypii GN=HAT2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.325e-12
Identity = 57/200 (28.50%), Postives = 95/200 (47.50%), Query Frame = 2
Query:    2 VKLWTVD---RPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVR-EMGSTMIIP-AHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF-------MVEDA------LVGRYDHHTEFAVGVDMSVLVEGLLASTGWDELVYVWQQGM 547
            V LW ++   +P S+ T   H   V +  W+   S+VF + S D TL++ D R  +     +P A  F  L+  ++K+   L+A+A VD  I ++D+R+   P+ V++GH  +V  V+FSPH   ++ S   D    +WD          +DA      L+  +  H         +  +  LLAST  D ++  W+  M
Sbjct:  211 VALWDIEAAKKPKSILT--SHDDIVNDVKWHEFESNVFGTVSEDKTLQVHDKRVRLEPVKKLPTASPFNTLS--FSKHSRNLLAAAGVDSQIYLYDMRDMSSPLHVMSGHQDSVTTVEFSPHTDGIICSSGSDRRAIIWDLTQIGAEQSQDDADDGAPELMMMHAGHRSPVNEFSFNPQIPWLLASTEEDNVIQAWKVSM 406          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: NUDF_ASPOR (Nuclear distribution protein nudF homolog OS=Aspergillus oryzae GN=nudF PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.649e-12
Identity = 56/173 (32.37%), Postives = 84/173 (48.55%), Query Frame = 2
Query:   26 PTSVR-TFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWN-KYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDHHTEFAVGVDMSVLVEG-LLASTGWDELVYVW 535
            P++VR + + H   V    ++P  S +  S S DCT++IWD         +  H   +   D+    D+ L+AS S D SIK+W   +    I  L GH + V  V+F P  RNLL S S D  + +WD +     V   + HT++    D+S+  +G  L STG D    +W
Sbjct:  104 PSTVRYSLESHRDKVNCVAFHPTFSSI-ASGSDDCTIKIWDWELGELERTLKGHTRAVRDVDYGGPRDNVLLASCSSDLSIKLWKPTDNYKNIRTLQGHDHIVSAVRFIP-SRNLLVSASRDNDMRIWD-VTTGYCVKTINGHTDWV--RDVSISFDGRFLFSTGQDMTARLW 271          
BLAST of CX294547 vs. ExPASy Swiss-Prot
Match: SPG16_MOUSE (Sperm-associated antigen 16 protein OS=Mus musculus GN=Spag16 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 2
Query:    2 VKLWTVDRPTSVRTFKEHAYCVYNATWNPRHSDVFCSASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDF 409
            +KLW +++     T + H + V++ TW+    D   SAS D T +IWDV        +  H   + + ++  + + L+ +AS DK++ +WD R  +   + L GH ++V    F+P R +++ASC       LWDF
Sbjct:  426 IKLWDLNKGECTLTLEGHNHAVWSCTWH-SCGDFVASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILL-TASADKTLSVWDARTGKCEQS-LYGHMHSVNDATFTP-RGHIIASCDARGVTKLWDF 557          

HSP 2 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 37/112 (33.04%), Postives = 60/112 (53.57%), Query Frame = 2
Query:  110 SASGDCTLRIWDVREMGSTMIIPAHEFEILACDWNKYDDCLIASASVDKSIKIWDVRNYRVPIAVLNGHGYAVRKVKFSPHRRNLLASCSYDMTVCLWDFMVEDALVGRYDH 445
            ++SGD T+++WD+ +   T+ +  H   + +C W+   D  +ASAS+D + KIWDV + R     L GH  +V  ++F P   N+L + S D T+ +WD          Y H
Sbjct:  419 TSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGD-FVASASLDMTSKIWDVNSERCRY-TLYGHTDSVNSIEFFPF-SNILLTASADKTLSVWDARTGKCEQSLYGH 527          
The following BLAST results are available for this feature:
BLAST of CX294547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
KTNB1_MOUSE1.487e-1231.28Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN1.487e-1231.28Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
WSB1_HUMAN1.942e-1231.62WD repeat and SOCS box-containing protein 1 OS=Hom... [more]
WDR5B_HUMAN1.942e-1229.61WD repeat-containing protein 5B OS=Homo sapiens GN... [more]
MSI2_ARATH1.942e-1227.27WD-40 repeat-containing protein MSI2 OS=Arabidopsi... [more]
COP1_ARATH3.312e-1231.49E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
WDR5B_PONAB4.325e-1229.05WD repeat-containing protein 5B OS=Pongo abelii PE... [more]
HAT2_ASHGO4.325e-1228.50Histone acetyltransferase type B subunit 2 OS=Ashb... [more]
NUDF_ASPOR5.649e-1232.37Nuclear distribution protein nudF homolog OS=Asper... [more]
SPG16_MOUSE7.378e-1230.15Sperm-associated antigen 16 protein OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC05054A08SK FlavRip1 Citrus clementina cDNA clone C05054A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294547 ID=CX294547; Name=CX294547; organism=Citrus clementina; type=EST; length=599bp
GGTTAAACTCTGGACCGTTGACCGGCCTACCAGTGTGCGAACATTTAAAG
AACACGCGTATTGCGTGTACAACGCCACGTGGAACCCGCGTCACAGCGAC
GTGTTCTGTTCCGCGAGTGGGGACTGCACTCTTCGAATTTGGGATGTGAG
AGAGATGGGCAGCACGATGATAATTCCGGCCCACGAGTTTGAAATTTTAG
CTTGTGATTGGAACAAGTACGATGACTGTTTAATTGCGAGTGCTTCAGTT
GATAAGAGTATTAAAATTTGGGATGTGAGGAACTATAGAGTTCCAATTGC
TGTATTAAATGGACATGGCTATGCCGTGAGGAAAGTGAAATTTTCACCGC
ACAGGAGGAATTTGTTAGCGTCTTGTTCGTATGACATGACTGTGTGCTTA
TGGGATTTCATGGTGGAGGATGCTTTGGTTGGGAGGTATGATCATCACAC
TGAGTTTGCCGTTGGGGTTGATATGAGTGTACTTGTTGAGGGATTGTTGG
CCAGTACTGGATGGGATGAGCTTGTCTATGTGTGGCAGCAAGGAATGGAT
CCCAGAGCGGTTTGATACTTGTTAGGAAGGGATTTTTCTTTTCTTCTTT
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